More than 300 homologs were found in PanDaTox collection
for query gene Plav_2608 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_2608  CRP/FNR family transcriptional regulator  100 
 
 
239 aa  479  1e-134  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.700213  normal  0.0258786 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  36.65 
 
 
229 aa  145  7.0000000000000006e-34  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  34.22 
 
 
230 aa  140  1.9999999999999998e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  37.74 
 
 
235 aa  139  3.9999999999999997e-32  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  37.12 
 
 
237 aa  137  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  37.74 
 
 
235 aa  137  2e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  37 
 
 
237 aa  135  4e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4353  CRP/FNR family transcriptional regulator  36.36 
 
 
227 aa  129  4.0000000000000003e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  36.84 
 
 
243 aa  128  7.000000000000001e-29  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  36.84 
 
 
243 aa  128  7.000000000000001e-29  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  35.85 
 
 
235 aa  128  9.000000000000001e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  37.74 
 
 
235 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  37.74 
 
 
235 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_010681  Bphyt_1092  transcriptional regulator, Crp/Fnr family  36.36 
 
 
234 aa  123  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  36.44 
 
 
227 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  37.26 
 
 
235 aa  120  1.9999999999999998e-26  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  33.18 
 
 
251 aa  117  1.9999999999999998e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  33.18 
 
 
251 aa  117  1.9999999999999998e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  33.18 
 
 
251 aa  117  1.9999999999999998e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  33.18 
 
 
251 aa  117  1.9999999999999998e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  33.18 
 
 
251 aa  117  1.9999999999999998e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  35.4 
 
 
228 aa  117  1.9999999999999998e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  35.85 
 
 
235 aa  115  5e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  35.55 
 
 
228 aa  114  1.0000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  32.7 
 
 
266 aa  113  3e-24  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_003296  RS01902  putative transcription regulator protein  34.96 
 
 
239 aa  112  6e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  0.980965  normal  0.145891 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  30.4 
 
 
226 aa  107  1e-22  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  33.85 
 
 
233 aa  108  1e-22  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  30.57 
 
 
239 aa  105  5e-22  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  30.14 
 
 
239 aa  104  1e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  31.78 
 
 
226 aa  103  2e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_010002  Daci_4994  cyclic nucleotide-binding protein  29.39 
 
 
247 aa  102  4e-21  Delftia acidovorans SPH-1  Bacteria  normal  0.103725  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  31.31 
 
 
236 aa  101  1e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  29.33 
 
 
239 aa  99.8  3e-20  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  31.94 
 
 
223 aa  100  3e-20  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_008752  Aave_3075  Crp/FNR family transcriptional regulator  30.88 
 
 
239 aa  100  3e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.193734 
 
 
-
 
NC_007948  Bpro_2959  Crp/FNR family transcriptional regulator  30.04 
 
 
241 aa  99.8  4e-20  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  29.33 
 
 
239 aa  99.4  4e-20  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  30.88 
 
 
239 aa  97.1  2e-19  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0775  Crp/FNR family transcriptional regulator  33.64 
 
 
237 aa  96.7  3e-19  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2665  Crp/FNR family transcriptional regulator  35.1 
 
 
239 aa  95.9  5e-19  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0675619  normal  0.290328 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  32.89 
 
 
224 aa  95.9  6e-19  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_007348  Reut_B4045  GntR family transcriptional regulator  32.44 
 
 
260 aa  94.4  2e-18  Ralstonia eutropha JMP134  Bacteria  normal  0.385107  n/a   
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  29.33 
 
 
239 aa  92.8  4e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  31.71 
 
 
225 aa  91.7  9e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2085  cyclic nucleotide binding protein  25 
 
 
238 aa  91.7  1e-17  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1913  CRP/FNR family transcriptional regulator  28.25 
 
 
241 aa  90.9  1e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.205993  normal  0.953786 
 
 
-
 
NC_010002  Daci_4881  Crp/FNR family transcriptional regulator  30.66 
 
 
278 aa  89.7  4e-17  Delftia acidovorans SPH-1  Bacteria  normal  0.484233  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  34.21 
 
 
222 aa  89.4  5e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  31.46 
 
 
232 aa  89  6e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  27.27 
 
 
231 aa  87.8  1e-16  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_008825  Mpe_A1951  Crp/FNR family transcriptional regulator  33.33 
 
 
234 aa  88.2  1e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.1084 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  26.98 
 
 
225 aa  87.4  2e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  29.44 
 
 
243 aa  87.4  2e-16  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  30.24 
 
 
224 aa  87.4  2e-16  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  32.98 
 
 
222 aa  86.3  4e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  28.78 
 
 
240 aa  85.1  8e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  28.96 
 
 
227 aa  84.7  0.000000000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.1 
 
 
225 aa  84  0.000000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012857  Rpic12D_3781  transcriptional regulator, Crp/Fnr family  31.82 
 
 
230 aa  84.3  0.000000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.505907  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30.43 
 
 
251 aa  84  0.000000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010678  Rpic_4858  transcriptional regulator, Crp/Fnr family  31.82 
 
 
230 aa  84.3  0.000000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.748285 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  27.68 
 
 
220 aa  82.4  0.000000000000006  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  28.38 
 
 
240 aa  82.4  0.000000000000006  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  32.63 
 
 
228 aa  81.6  0.000000000000009  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  29.26 
 
 
224 aa  80.1  0.00000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  28.19 
 
 
219 aa  79.7  0.00000000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  29.47 
 
 
225 aa  79.7  0.00000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  29.25 
 
 
224 aa  79.3  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.32 
 
 
236 aa  79.3  0.00000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  27.06 
 
 
231 aa  79  0.00000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.51 
 
 
226 aa  79  0.00000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0313  cyclic nucleotide-binding protein  27.19 
 
 
234 aa  78.6  0.00000000000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.23 
 
 
224 aa  77.8  0.0000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  30.13 
 
 
258 aa  78.2  0.0000000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  29.76 
 
 
229 aa  78.2  0.0000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  30.13 
 
 
258 aa  78.2  0.0000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0243  cyclic nucleotide-binding  26.96 
 
 
236 aa  77  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  28.49 
 
 
240 aa  77.8  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  27.75 
 
 
236 aa  77.8  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  27.75 
 
 
243 aa  77  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  27.48 
 
 
233 aa  77  0.0000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  29.13 
 
 
226 aa  76.3  0.0000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  29.47 
 
 
226 aa  76.3  0.0000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  29.61 
 
 
222 aa  76.3  0.0000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  29.03 
 
 
285 aa  76.3  0.0000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  26.85 
 
 
238 aa  75.9  0.0000000000005  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  29.95 
 
 
228 aa  75.5  0.0000000000007  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_009719  Plav_0827  CRP/FNR family transcriptional regulator  27.19 
 
 
234 aa  75.5  0.0000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0664388  normal  0.45478 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  29.02 
 
 
229 aa  75.1  0.0000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  26.7 
 
 
236 aa  75.1  0.0000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  24.64 
 
 
238 aa  74.7  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  24.14 
 
 
352 aa  74.7  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  26.29 
 
 
221 aa  74.3  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.36 
 
 
228 aa  73.6  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4557  Crp/FNR family transcriptional regulator  26.73 
 
 
239 aa  73.6  0.000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  0.877029  hitchhiker  0.000201157 
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  26.85 
 
 
223 aa  73.6  0.000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.05 
 
 
225 aa  73.2  0.000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  29.32 
 
 
234 aa  73.2  0.000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  27.11 
 
 
225 aa  73.6  0.000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
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