More than 300 homologs were found in PanDaTox collection
for query gene Plav_0827 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_0827  CRP/FNR family transcriptional regulator  100 
 
 
234 aa  471  1e-132  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0664388  normal  0.45478 
 
 
-
 
NC_009439  Pmen_4353  CRP/FNR family transcriptional regulator  36.61 
 
 
227 aa  114  1.0000000000000001e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  34.36 
 
 
237 aa  114  1.0000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  34.36 
 
 
237 aa  113  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  35.1 
 
 
228 aa  112  4.0000000000000004e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  34.62 
 
 
228 aa  110  1.0000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  33.96 
 
 
235 aa  109  3e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  34.29 
 
 
235 aa  106  4e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  33.81 
 
 
235 aa  104  1e-21  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  34.12 
 
 
227 aa  99.4  5e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  34.43 
 
 
235 aa  98.6  7e-20  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  33.96 
 
 
235 aa  98.2  1e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  33.96 
 
 
235 aa  98.2  1e-19  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  33.18 
 
 
251 aa  97.1  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  33.18 
 
 
251 aa  97.1  2e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  33.18 
 
 
251 aa  97.1  2e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  33.18 
 
 
251 aa  97.1  2e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  33.18 
 
 
251 aa  97.1  2e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_010681  Bphyt_1092  transcriptional regulator, Crp/Fnr family  28.84 
 
 
234 aa  95.9  5e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  31.11 
 
 
233 aa  95.5  6e-19  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  29.7 
 
 
243 aa  95.1  8e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_010002  Daci_4881  Crp/FNR family transcriptional regulator  32.42 
 
 
278 aa  93.6  2e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.484233  normal 
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  32.55 
 
 
266 aa  93.6  3e-18  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  34.29 
 
 
235 aa  92.8  4e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  33.96 
 
 
243 aa  89.7  3e-17  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  33.96 
 
 
243 aa  89.7  3e-17  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.01 
 
 
230 aa  90.1  3e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.98 
 
 
226 aa  84.7  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009952  Dshi_3110  cyclic nucleotide-binding protein  28.05 
 
 
222 aa  84  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS01902  putative transcription regulator protein  31.86 
 
 
239 aa  83.6  0.000000000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.980965  normal  0.145891 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  30.65 
 
 
227 aa  83.2  0.000000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2608  CRP/FNR family transcriptional regulator  28.51 
 
 
239 aa  82.8  0.000000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.700213  normal  0.0258786 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.78 
 
 
224 aa  82.4  0.000000000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  29.95 
 
 
226 aa  81.6  0.000000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  25 
 
 
226 aa  79.7  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  25.6 
 
 
226 aa  77.8  0.0000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  23.08 
 
 
229 aa  78.2  0.0000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2515  cyclic nucleotide-binding  30.41 
 
 
231 aa  77.8  0.0000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.513928  normal  0.4337 
 
 
-
 
NC_007348  Reut_B4045  GntR family transcriptional regulator  30.73 
 
 
260 aa  77.4  0.0000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.385107  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  27.05 
 
 
222 aa  77.4  0.0000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  31.67 
 
 
228 aa  76.6  0.0000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008752  Aave_2665  Crp/FNR family transcriptional regulator  30.8 
 
 
239 aa  76.3  0.0000000000004  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0675619  normal  0.290328 
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  27.91 
 
 
232 aa  75.1  0.0000000000009  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  26.96 
 
 
243 aa  75.1  0.000000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  24.19 
 
 
225 aa  74.3  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_010002  Daci_0775  Crp/FNR family transcriptional regulator  28.84 
 
 
237 aa  73.9  0.000000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3781  transcriptional regulator, Crp/Fnr family  29.77 
 
 
230 aa  73.6  0.000000000003  Ralstonia pickettii 12D  Bacteria  normal  0.505907  normal 
 
 
-
 
NC_010678  Rpic_4858  transcriptional regulator, Crp/Fnr family  29.77 
 
 
230 aa  73.6  0.000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal  0.748285 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  28.44 
 
 
231 aa  71.2  0.00000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  28.44 
 
 
231 aa  71.2  0.00000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  31.11 
 
 
230 aa  70.1  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  28.04 
 
 
262 aa  70.1  0.00000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0243  cyclic nucleotide-binding  27.23 
 
 
236 aa  68.9  0.00000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  26.84 
 
 
246 aa  68.9  0.00000000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  26.44 
 
 
229 aa  68.2  0.0000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  23.81 
 
 
355 aa  68.2  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  27.88 
 
 
224 aa  67.8  0.0000000001  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_004578  PSPTO_0313  cyclic nucleotide-binding protein  25.94 
 
 
234 aa  67  0.0000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  26.7 
 
 
235 aa  66.2  0.0000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.4 
 
 
224 aa  66.2  0.0000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  31.9 
 
 
242 aa  65.9  0.0000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_010483  TRQ2_1644  Crp/FNR family transcriptional regulator  25.39 
 
 
200 aa  65.9  0.0000000006  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  28.72 
 
 
224 aa  65.5  0.0000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.96 
 
 
236 aa  65.5  0.0000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  26.78 
 
 
258 aa  65.1  0.0000000009  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  26.78 
 
 
258 aa  65.1  0.0000000009  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  26.32 
 
 
352 aa  64.7  0.000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  30.96 
 
 
222 aa  65.1  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25.73 
 
 
231 aa  63.5  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  24.74 
 
 
244 aa  64.3  0.000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  31 
 
 
285 aa  63.5  0.000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  27.51 
 
 
269 aa  63.9  0.000000002  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_010552  BamMC406_4190  cyclic nucleotide-binding protein  27.27 
 
 
262 aa  63.9  0.000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.456577  normal 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  28.19 
 
 
224 aa  63.2  0.000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.25 
 
 
225 aa  63.2  0.000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3712  cyclic nucleotide-binding protein  27.88 
 
 
259 aa  63.5  0.000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.971291  normal 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  29.27 
 
 
227 aa  62.8  0.000000005  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.63 
 
 
228 aa  62.4  0.000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  25.81 
 
 
224 aa  62.8  0.000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  27.66 
 
 
224 aa  62.4  0.000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_012791  Vapar_0075  putative transcriptional regulator, Crp/Fnr family  23.66 
 
 
236 aa  62  0.000000008  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.5 
 
 
229 aa  62  0.000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  25.6 
 
 
350 aa  61.6  0.000000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  24.55 
 
 
229 aa  61.6  0.000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  25.53 
 
 
217 aa  61.2  0.00000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  27.66 
 
 
224 aa  61.2  0.00000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.13 
 
 
224 aa  61.2  0.00000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009429  Rsph17025_3179  hypothetical protein  27.49 
 
 
227 aa  60.8  0.00000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  27.13 
 
 
224 aa  61.6  0.00000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.13 
 
 
224 aa  61.2  0.00000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.13 
 
 
224 aa  61.2  0.00000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  25.24 
 
 
227 aa  60.5  0.00000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  26.06 
 
 
220 aa  60.8  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  25.76 
 
 
263 aa  60.5  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  26.13 
 
 
239 aa  60.8  0.00000002  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  25.76 
 
 
263 aa  60.5  0.00000002  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.8 
 
 
225 aa  60.5  0.00000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.7 
 
 
228 aa  60.8  0.00000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  22.68 
 
 
236 aa  60.1  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_006349  BMAA1395  cyclic nucleotide-binding domain-containing protein  29.65 
 
 
304 aa  59.7  0.00000003  Burkholderia mallei ATCC 23344  Bacteria  normal  0.553188  n/a   
 
 
-
 
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