| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4557 |
|---|
| Symbol | |
|---|
| ID | 6118923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5527577 |
|---|
| End bp | 5528296 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641636128 |
|---|
| Product | Crp/FNR family transcriptional regulator |
|---|
| Protein accession | YP_001762902 |
|---|
| Protein GI | 170728876 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.877029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000201157 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGTCGCCAA ATAGACAATC TTTAAGAAAA TATAGCCAAG AGGAGTTAAC TAGTTTTCTA
GCCTACTCCG GGGTTTTTAG TGTCTGTAGT CAGGATGAAA TCGACTATAT TCTGAGCCAA
TTAAAGACTA ATAAATATAA AAATGAGACA GTTATAGCCC ATAGGGAAGA TGTGGGAGAT
CAAGTTAGAT TTGTTATCAA TGGCAGCTTA AATATTGTTG CGACCAGCTT AGATGGCAAG
GAGGTAAGAT TTCCTCCAAT TGGTCCTCAA CGTTGGGTTG GCTGGATCTC CTGTTTCGAT
AATCAAATAC TCTCCCACGA CTGGGTTGCT ACGGCTAAAT CTGAGGTGAT CTCAGTGCCA
GGCGCAGTGA TCCGCAAGCT GTGTGAAAAT AACCCCGCCC TCTACCCAAA GGTGATGACA
GAGATAAACA GACAGTTCAA ACTGTTAATG AGCTGGACTG AGTTTGTCAG CCTACACTCA
CTAACCGCCA GAGTCAGGAT GTTGGTCCAA ATTTTAGCGC AAATTAGTGC TACCCCAATG
GATGACCAGC CCGGATGGTT ACAGGTCGAT GTCACCCAAG AGCATCTTGC TTCTTTTCTC
AACCTCTCAC GCCAGACCGC CAATAAACTA CTTGTCGAGT TAGAAAAAGA GCAGATCATT
AGCATCGGTT ATCGAAAAAT TTTAATCAAT AGCGAGAAGC TGCCTAATCT CGCCAGTTAA
|
|---|
| Protein sequence | MSPNRQSLRK YSQEELTSFL AYSGVFSVCS QDEIDYILSQ LKTNKYKNET VIAHREDVGD
QVRFVINGSL NIVATSLDGK EVRFPPIGPQ RWVGWISCFD NQILSHDWVA TAKSEVISVP
GAVIRKLCEN NPALYPKVMT EINRQFKLLM SWTEFVSLHS LTARVRMLVQ ILAQISATPM
DDQPGWLQVD VTQEHLASFL NLSRQTANKL LVELEKEQII SIGYRKILIN SEKLPNLAS
|
|---|
| |