100 homologs were found in PanDaTox collection
for query gene Msil_2760 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_2760  TRAP transporter solute receptor, TAXI family  100 
 
 
433 aa  869    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010511  M446_1581  TRAP transporter solute receptor TAXI family protein  46.9 
 
 
457 aa  370  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.193293 
 
 
-
 
NC_011004  Rpal_0409  TRAP transporter solute receptor, TAXI family  30.33 
 
 
462 aa  176  8e-43  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.309942  n/a   
 
 
-
 
NC_011894  Mnod_0342  TRAP transporter solute receptor, TAXI family  34.28 
 
 
423 aa  171  2e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0450847  n/a   
 
 
-
 
NC_007958  RPD_0702  TRAP transporter solute receptor TAXI family protein  29.59 
 
 
480 aa  169  1e-40  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.871087  normal 
 
 
-
 
NC_010511  M446_2265  TRAP transporter solute receptor TAXI family protein  30.24 
 
 
442 aa  165  2.0000000000000002e-39  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00194673 
 
 
-
 
NC_007778  RPB_0100  TRAP transporter solute receptor TAXI family protein  28.15 
 
 
480 aa  163  5.0000000000000005e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2525  TRAP transporter solute receptor TAXI family protein  29.98 
 
 
486 aa  161  2e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.839724  normal  0.154925 
 
 
-
 
NC_009485  BBta_0249  hypothetical protein  28.04 
 
 
448 aa  161  2e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  28.8 
 
 
469 aa  152  8e-36  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  29.02 
 
 
474 aa  151  2e-35  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  28.8 
 
 
469 aa  150  5e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.301233 
 
 
-
 
NC_011666  Msil_3025  TRAP transporter solute receptor, TAXI family  28.07 
 
 
441 aa  149  1.0000000000000001e-34  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_3495  hypothetical protein  27.98 
 
 
465 aa  147  3e-34  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2036  TRAP-type uncharacterized transport system periplasmic component-like protein  33.71 
 
 
463 aa  144  2e-33  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00372211 
 
 
-
 
NC_007958  RPD_1959  hypothetical protein  27.92 
 
 
467 aa  141  1.9999999999999998e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3542  TRAP-type uncharacterized transport system periplasmic component-like protein  28.74 
 
 
472 aa  137  5e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.919124 
 
 
-
 
NC_011004  Rpal_2087  hypothetical protein  28.74 
 
 
466 aa  136  8e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073016  n/a   
 
 
-
 
NC_011666  Msil_2797  TRAP-type uncharacterized transport system periplasmic component-like protein  32.93 
 
 
485 aa  134  1.9999999999999998e-30  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_0519  TRAP-type uncharacterized transport system periplasmic component-like protein  33.94 
 
 
463 aa  134  3.9999999999999996e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2753  hypothetical protein  25.68 
 
 
433 aa  131  3e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5654  TRAP-type uncharacterized transport system periplasmic component-like protein  28.24 
 
 
471 aa  130  4.0000000000000003e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3430  TRAP transporter solute receptor TAXI family protein  27.21 
 
 
461 aa  129  8.000000000000001e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.199051 
 
 
-
 
NC_007298  Daro_2929  hypothetical protein  26.02 
 
 
443 aa  120  7e-26  Dechloromonas aromatica RCB  Bacteria  normal  0.0484025  normal 
 
 
-
 
NC_010511  M446_1545  TRAP-type uncharacterized transport system periplasmic component-like protein  26.51 
 
 
468 aa  119  9.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0909  hypothetical protein  28 
 
 
491 aa  119  1.9999999999999998e-25  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4219  TRAP-type uncharacterized transport system periplasmic component-like protein  28.87 
 
 
465 aa  115  1.0000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.340628 
 
 
-
 
NC_011894  Mnod_0107  TRAP-type uncharacterized transport system periplasmic component-like protein  27.22 
 
 
453 aa  115  1.0000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0899  hypothetical protein  27.49 
 
 
437 aa  115  1.0000000000000001e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.727607  normal  0.541745 
 
 
-
 
NC_009485  BBta_6537  hypothetical protein  26.56 
 
 
467 aa  115  2.0000000000000002e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.866176  normal 
 
 
-
 
NC_011757  Mchl_0184  TRAP-type uncharacterized transport system periplasmic component-like protein  25.85 
 
 
453 aa  114  4.0000000000000004e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.864216  normal  0.611675 
 
 
-
 
NC_011894  Mnod_5694  TRAP-type uncharacterized transport system periplasmic component-like protein  25.94 
 
 
477 aa  112  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0239  TRAP-type uncharacterized transport system periplasmic component-like protein  25.61 
 
 
453 aa  111  2.0000000000000002e-23  Methylobacterium extorquens PA1  Bacteria  normal  0.264256  normal 
 
 
-
 
NC_011884  Cyan7425_4597  TRAP transporter solute receptor, TAXI family  25.77 
 
 
454 aa  109  1e-22  Cyanothece sp. PCC 7425  Bacteria  normal  0.244351  normal 
 
 
-
 
NC_010511  M446_4743  TRAP-type uncharacterized transport system periplasmic component-like protein  27.57 
 
 
457 aa  107  5e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.704005  normal 
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  23.27 
 
 
446 aa  102  9e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010510  Mrad2831_5881  TRAP-type uncharacterized transport system periplasmic component-like protein  22.25 
 
 
440 aa  85.9  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.810377 
 
 
-
 
NC_008740  Maqu_2063  TRAP transporter solute receptor TAXI family protein  26.64 
 
 
327 aa  79.7  0.0000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.800081  n/a   
 
 
-
 
NC_011884  Cyan7425_4331  TRAP transporter solute receptor, TAXI family  25.7 
 
 
453 aa  74.3  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.794472  normal 
 
 
-
 
NC_008345  Sfri_3566  TRAP transporter solute receptor, TAXI family protein  27.14 
 
 
317 aa  73.6  0.000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.28304  n/a   
 
 
-
 
NC_009439  Pmen_4560  TRAP transporter solute receptor TAXI family protein  28.62 
 
 
317 aa  71.2  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2949  TRAP transporter solute receptor TAXI family protein  27.72 
 
 
318 aa  70.9  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0733999 
 
 
-
 
NC_009438  Sputcn32_3381  TRAP transporter solute receptor TAXI family protein  25.84 
 
 
318 aa  70.9  0.00000000004  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_4067  TRAP transporter solute receptor TAXI family protein  26.84 
 
 
318 aa  68.2  0.0000000003  Chelativorans sp. BNC1  Bacteria  normal  0.548232  n/a   
 
 
-
 
NC_004347  SO_0456  immunogenic-related protein  25.28 
 
 
318 aa  66.2  0.000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A0608  TRAP transporter solute receptor TAXI family protein  25.09 
 
 
326 aa  65.9  0.000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.516133  n/a   
 
 
-
 
NC_011894  Mnod_3511  TRAP-type uncharacterized transport system periplasmic component-like protein  26.09 
 
 
179 aa  65.5  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3828  TRAP transporter solute receptor, TAXI family  25.09 
 
 
318 aa  64.7  0.000000003  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0433  TRAP transporter solute receptor TAXI family protein  25.09 
 
 
318 aa  64.7  0.000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6347  hypothetical protein  23.78 
 
 
319 aa  64.7  0.000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.884307  n/a   
 
 
-
 
NC_009665  Shew185_3901  TRAP transporter solute receptor TAXI family protein  25.09 
 
 
318 aa  64.7  0.000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4024  TRAP transporter solute receptor TAXI family protein  25.09 
 
 
318 aa  64.7  0.000000003  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02419  hypothetical protein  23.33 
 
 
323 aa  63.9  0.000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003379  immunogenic protein  24.91 
 
 
323 aa  63.9  0.000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0177  TRAP transporter solute receptor TAXI family protein  23.33 
 
 
326 aa  63.9  0.000000006  Chelativorans sp. BNC1  Bacteria  normal  0.811435  n/a   
 
 
-
 
NC_008463  PA14_73120  hypothetical protein  23.48 
 
 
319 aa  63.2  0.000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2848  immunogenic protein  23.7 
 
 
328 aa  63.2  0.000000009  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00793  hypothetical protein  22.99 
 
 
322 aa  63.2  0.000000009  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009429  Rsph17025_3688  hypothetical protein  24.3 
 
 
324 aa  63.2  0.00000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.269569 
 
 
-
 
NC_008321  Shewmr4_0461  TRAP transporter solute receptor TAXI family protein  25.28 
 
 
318 aa  62.4  0.00000001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3568  TRAP transporter solute receptor TAXI family protein  25.28 
 
 
318 aa  62.4  0.00000001  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0457  response regulator receiver protein  25.28 
 
 
318 aa  62.4  0.00000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0746  TRAP-T family transporter periplasmic substrate binding subunit  23.57 
 
 
344 aa  62  0.00000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.842378  normal 
 
 
-
 
NC_009050  Rsph17029_3483  TRAP transporter solute receptor TAXI family protein  23.93 
 
 
324 aa  61.2  0.00000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001678  TRAP transporter solute receptor TAXI family precursor  21.91 
 
 
322 aa  61.2  0.00000003  Vibrio sp. Ex25  Bacteria  normal  0.150837  n/a   
 
 
-
 
NC_007494  RSP_1413  TRAP-T family transporter periplasmic binding component  23.93 
 
 
324 aa  61.2  0.00000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2671  TRAP transporter solute receptor TAXI family protein  23.27 
 
 
325 aa  60.8  0.00000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4400  TRAP transporter solute receptor TAXI family protein  24.01 
 
 
315 aa  60.1  0.00000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.478919  normal  0.223671 
 
 
-
 
NC_002947  PP_3954  periplasmic binding protein, putative  25.99 
 
 
316 aa  59.3  0.0000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.391333 
 
 
-
 
NC_009049  Rsph17029_0267  TRAP transporter solute receptor TAXI family protein  26.39 
 
 
317 aa  58.5  0.0000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.418804  normal 
 
 
-
 
NC_009620  Smed_3839  TRAP transporter solute receptor TAXI family protein  23.13 
 
 
327 aa  58.5  0.0000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0135422  normal 
 
 
-
 
NC_011312  VSAL_I0356  hypothetical protein  21.28 
 
 
324 aa  58.9  0.0000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.097907  n/a   
 
 
-
 
NC_011004  Rpal_5002  TRAP transporter solute receptor, TAXI family  22.96 
 
 
315 aa  58.9  0.0000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.117483  n/a   
 
 
-
 
NC_007493  RSP_1613  TRAP dicarboxylate family transporter DctP subunit  26.39 
 
 
317 aa  58.5  0.0000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0741  TRAP transporter solute receptor TAXI family protein  25.68 
 
 
348 aa  58.2  0.0000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0645  immunogenic protein  21.45 
 
 
325 aa  58.2  0.0000003  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.208055  n/a   
 
 
-
 
NC_007958  RPD_4226  TRAP transporter solute receptor TAXI family protein  22.59 
 
 
317 aa  57.4  0.0000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0963703  normal  0.823727 
 
 
-
 
NC_007948  Bpro_2004  TRAP transporter solute receptor TAXI family protein  24.46 
 
 
338 aa  56.6  0.0000009  Polaromonas sp. JS666  Bacteria  normal  0.373091  normal 
 
 
-
 
NC_009428  Rsph17025_0290  TRAP transporter solute receptor TAXI family protein  26.02 
 
 
317 aa  56.2  0.000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0541635  normal 
 
 
-
 
NC_007778  RPB_4331  TRAP transporter solute receptor TAXI family protein  22.51 
 
 
315 aa  55.5  0.000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0888724 
 
 
-
 
NC_013889  TK90_1890  TRAP transporter solute receptor, TAXI family  24.73 
 
 
333 aa  55.1  0.000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.966009  normal 
 
 
-
 
NC_007802  Jann_2331  TRAP transporter solute receptor TAXI family protein  22.06 
 
 
322 aa  54.7  0.000003  Jannaschia sp. CCS1  Bacteria  normal  0.0699297  normal 
 
 
-
 
NC_011662  Tmz1t_0725  TRAP transporter solute receptor, TAXI family  23.13 
 
 
322 aa  54.3  0.000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0937  putative TRAP-type uncharacterized transport system, periplasmic component  23.25 
 
 
320 aa  54.3  0.000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1764  TRAP transporter solute receptor TAXI family protein  23.57 
 
 
323 aa  53.9  0.000006  Marinomonas sp. MWYL1  Bacteria  normal  0.513988  normal 
 
 
-
 
NC_007908  Rfer_1040  TRAP transporter solute receptor TAXI family protein  22.68 
 
 
324 aa  53.1  0.000009  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0431  TRAP transporter solute receptor, TAXI family  24.12 
 
 
316 aa  52.8  0.00001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3267  hypothetical protein  23.7 
 
 
323 aa  53.1  0.00001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.743942 
 
 
-
 
NC_009952  Dshi_1443  TRAP transporter solute receptor  22.71 
 
 
322 aa  50.1  0.00008  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.552427 
 
 
-
 
NC_007354  Ecaj_0394  putative immunogenic protein  20.34 
 
 
326 aa  48.9  0.0002  Ehrlichia canis str. Jake  Bacteria  normal  0.0147572  n/a   
 
 
-
 
NC_013093  Amir_5695  TRAP transporter solute receptor, TAXI family  25.5 
 
 
308 aa  48.5  0.0002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1445  TRAP transporter solute receptor, TAXI family  24.24 
 
 
307 aa  48.9  0.0002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1252  TRAP transporter solute receptor TAXI family protein  21.32 
 
 
323 aa  48.1  0.0003  Ruegeria sp. TM1040  Bacteria  normal  0.0250918  normal 
 
 
-
 
NC_009439  Pmen_4446  TRAP transporter solute receptor TAXI family protein  25.22 
 
 
323 aa  47.4  0.0005  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4101  TRAP transporter solute receptor TAXI family protein  23.9 
 
 
317 aa  47.4  0.0005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.32075  n/a   
 
 
-
 
NC_008044  TM1040_1175  TRAP transporter solute receptor TAXI family protein  23.26 
 
 
330 aa  47  0.0007  Ruegeria sp. TM1040  Bacteria  normal  0.155667  normal  0.336664 
 
 
-
 
NC_007908  Rfer_1635  TRAP transporter solute receptor TAXI family protein  23.68 
 
 
319 aa  45.8  0.001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2418  TRAP-type uncharacterized transport system periplasmic component-like protein  29.33 
 
 
176 aa  45.4  0.002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4986  TRAP transporter solute receptor TAXI family protein  19.72 
 
 
512 aa  44.7  0.004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.354924  normal 
 
 
-
 
NC_013522  Taci_0371  TRAP transporter solute receptor, TAXI family  22.47 
 
 
329 aa  43.5  0.007  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.671044  n/a   
 
 
-
 
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