| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4986 |
|---|
| Symbol | |
|---|
| ID | 4246641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 7622202 |
|---|
| End bp | 7623740 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638109797 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_724373 |
|---|
| Protein GI | 113478312 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.354924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA ACATATACTC CCATCACCAA AAAATCAGTA AATTAATAGG AGGAATATTA
TTATCAGCGA TCACATTAAC TAGCTGTACT CCCCAAAATC AGACCCTCAT ACTCTCAAGC
GGCGTTGAAG GTGGAGCATA CGAGCGTATT GGCAGACAAA TAATACATTC AGCTAGTGAT
GTTGGGAAAA TATCTATTGA CGACAATATA TCCCAGGGTT CACAGGAAAA CCTACAACGC
CTGCGCAATA GAGAAGCAGA TATTGCCCTA GTTCAATTAG ATGTAGCTAG CGAAGCTATG
AAAGCTGGAC AAATACAAGC AGTAGCTGTT CTTGCTAATG AATATTTGCA CCTCATTACC
CTATCTGACT CGGAAATAAA AACTTTTCAG GATCTCAAAG AAAAAAGAGT TAGCTTTAGT
ACTCCTGGCA GCGGTACTTA CTTTACTGCT AAACGACTAT TCAGTGCTAC AAATTTAAAA
ATCATAGAAG AAGAACTTGA TCTAGAACAA GGGTTTAATA AACTTAAACA AAGAGAAATA
GATGCTTTAG TTTATGTCGG TCCCTTGGGA GGCAGTAAAA AAGTGAAAAG CCAACTAACG
AGTCCTCCTA GTCTTAAATT AGTTCCCATA ACGACTTCTT TTATTAACTA TTTAACTATT
CAATTTCCAG AGTCATACCA AAGTACAGTC TTTCCCAAAG GTAGTTATAT GCCTCTATCA
CCAATACCGG AGAAAGATTT ACCGACTATT TCTACTGCTG CTGCTTTAGT AACTCGCCCT
GATGTTAGCA AAGAAAAAAT TGCTCTTTTA ACTTGGTCTT TGATTTCATC CTATCAAAAA
TACTCGTTAT TTGATCCAGA ATTTTCTCAG GACGACCCTG AGTCTTTGTT GAGTAATGGT
TTACTATATC TCCATCCTGG TGCTAAACTA TCATTTGAGC AAGGGGATCC TAGAAAAATT
TGGATGCGTT ACTTTGAGGA AAATCAAGAC TTACAAGCTA GTTTTATTAT TATTTTGTTT
ACAGGTATTC TCGGTTTTAT GCTACGAATG TGGCGTCATA AACAGTGTAA AAAGCTGATT
ATAAATACCC ATTTAGCTCT CAATGAAATA AGTATGTCTG CACAAACAAA TCCTAGTAAA
GCTCTTAAAG AGGTGGAAGA GTTAAGACAC CAACATCGGT TAATGTTGGT TGAAGGAAAT
TTGTCTAGAG AAGCTTATGA AAAACTAGAG CATATGACAC AAGATCTTGC TAATAAGTCT
CGAAAACTAC AAGAAAAACA ACATCGAAAA GATATTCAAA ATACAATAGC ATTAATTGAT
GAGTTTCAAA GTCTTTCAGG AATATGCCAA GAAAAAATGA GAGAAAGACT GGAAACTGCA
GCTAATAAAT ATAGGGAAAT GTTATTATTA AATCAAATTG ATATTCAGAC TTACATTCAT
CTAAACCAGC AGGTTCGTTC CTATCTCAAC CAAAATAATA ATCATTATTA TCAGGTTAAT
AATAATCGTC ATTTTCCTAT AGGTTCAGAG GATAATTGA
|
|---|
| Protein sequence | MLNNIYSHHQ KISKLIGGIL LSAITLTSCT PQNQTLILSS GVEGGAYERI GRQIIHSASD
VGKISIDDNI SQGSQENLQR LRNREADIAL VQLDVASEAM KAGQIQAVAV LANEYLHLIT
LSDSEIKTFQ DLKEKRVSFS TPGSGTYFTA KRLFSATNLK IIEEELDLEQ GFNKLKQREI
DALVYVGPLG GSKKVKSQLT SPPSLKLVPI TTSFINYLTI QFPESYQSTV FPKGSYMPLS
PIPEKDLPTI STAAALVTRP DVSKEKIALL TWSLISSYQK YSLFDPEFSQ DDPESLLSNG
LLYLHPGAKL SFEQGDPRKI WMRYFEENQD LQASFIIILF TGILGFMLRM WRHKQCKKLI
INTHLALNEI SMSAQTNPSK ALKEVEELRH QHRLMLVEGN LSREAYEKLE HMTQDLANKS
RKLQEKQHRK DIQNTIALID EFQSLSGICQ EKMRERLETA ANKYREMLLL NQIDIQTYIH
LNQQVRSYLN QNNNHYYQVN NNRHFPIGSE DN
|
|---|
| |