| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0702 |
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| Symbol | |
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| ID | 4021175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 789647 |
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| End bp | 791089 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960891 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_567841 |
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| Protein GI | 91975182 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.871087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTCA AGCGATTATT CGCCCGGTCG ACGGACGAGC CCGAGCGCGT GGACCCGTTG
CTGCACAATT CTCCGCGCCC GGTGCGCCGG AGGATGACCT TGGTCTCGCT GGCCGCCATC
CTGGCGCTGA TCGGCGCGGT GAGCGCTGCC TATTACTTCG CAATGCGGCC GGCGACGTTG
AAGATCGCGG TCGGGCCGCA AGGCGGCGAC GATCTGCGGC TGATTCAGGC GCTGGCGCAG
GCATTTCACC GGGATCGCAA CAATGTCCGG ATGCGCCCGG TCGTCACCGA CGGACCGGCG
GCGAGCGCGT CGGCGATCCG AACCGACGCC GCCGATCTCG CCGTCATCCG CGGTGACCTG
CCGGTGCCGC GAAACGCTCG CTCGGTGGCG GTGCTGCACA AGAACGTCGC GGTGCTGTGG
GCGCCGGGCA AGCCTGCAGG CGGCAAGCGC AAGAAGGCCG TCCCGGGACT CACCGGCATC
ACCCAATTGG TCGGCAAGCG CGTCGGCGTG ATCGGCCGCA CCGAGGCCAA TGCCGGACTG
CTCAGGGTGA TCCTGCAGCA ATACGGCGTC GATCCGACCA AGGTCGAGAG CATCCAGCTC
ACCACCGCCG ACGTCGCCGA TGCGGCGCAG AACCGCAAGG TCGACGCCTT CATCGCCGCC
GGCCCGCTGA ACAGCAAGGT GATCAGCGAG GCGCTGGCCG CCACCGCGCA TGGCGGGGCC
GAGCCGGTGT TTCTCGGAAT CGATTCGGCG GAGGCGCTCG CCGCCAATCA TCCGTCCTAC
GAATCCGCCG CGATCCCGGC AGGCGCGTTC GGCGGCGCTC CGGCGCGACC GGACAGCGAG
ATCAAGACCA TCAGCTTCTC GCACTACATC GTCGCGCGTG AGGGCGCGTC CGACAGCACG
ATCGCCACCT TCACGCAGCA GCTGTTCACG GCGCGGCAGA ACGTGATTTC GGAGAATCCG
CTCGCGGCGA TGATCGAAAC TCCGGACACC GACAAGGATG CGGTGATCCC GGTGCAGGCC
GGCGCCGCCG CCTATGTCGA CGGCGAGGAA CGCAGCTTCC TCGATCGCTA CGGCGATCTG
ATCTGGTTCT CGCTGATCGG ATTGTCGGCG ACGGGCTCGC TCGGCGCGTG GTTCGCCAGC
TATCTGCGCA AGGACGAGCG TAACACCAAC GTCTCGCAGC GCGACCGGCT GCTCGACATG
CTGGCCGCGG CGCGGCGCTG CGATGTTTCC GACGAACTCG ACGCGATGCA GACCGAAGCG
GACGCCATCC TGCGCGATAC GCTGACCTGC TACGAGAACG GCGCGATCGA CAGCGCGTCG
CTGACCGCCT TCAGCATCGC GCTGGAGCAG TTCCACAACG CGGTGGTCGA TCGCAGGATC
CTGCTGTCGA CGATCCCGCC GGCGCCGCCG GTTGTTCGCC CGGCGCGGCC GCAGGTGGTG
TGA
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| Protein sequence | MDFKRLFARS TDEPERVDPL LHNSPRPVRR RMTLVSLAAI LALIGAVSAA YYFAMRPATL
KIAVGPQGGD DLRLIQALAQ AFHRDRNNVR MRPVVTDGPA ASASAIRTDA ADLAVIRGDL
PVPRNARSVA VLHKNVAVLW APGKPAGGKR KKAVPGLTGI TQLVGKRVGV IGRTEANAGL
LRVILQQYGV DPTKVESIQL TTADVADAAQ NRKVDAFIAA GPLNSKVISE ALAATAHGGA
EPVFLGIDSA EALAANHPSY ESAAIPAGAF GGAPARPDSE IKTISFSHYI VAREGASDST
IATFTQQLFT ARQNVISENP LAAMIETPDT DKDAVIPVQA GAAAYVDGEE RSFLDRYGDL
IWFSLIGLSA TGSLGAWFAS YLRKDERNTN VSQRDRLLDM LAAARRCDVS DELDAMQTEA
DAILRDTLTC YENGAIDSAS LTAFSIALEQ FHNAVVDRRI LLSTIPPAPP VVRPARPQVV
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