Gene VIBHAR_00793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00793 
Symbol 
ID5555864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp777436 
End bp778404 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content46% 
IMG OID640906287 
Producthypothetical protein 
Protein accessionYP_001444021 
Protein GI156973114 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTTA ACAAACTTCT AAAAGTAGGC GCTATCGCTG CAGCAGTTAT GGGCGCAGGC 
GCAGTTAACG CTCAAGAGTT TATTACTATC GGTACTGGCT CTGTTACAGG TGTTTACTAC 
CCTACTGGTG GTGCTATTTG TAAATTGGTA AACAAAGGTC GTAAAGATCA CAACATTCGT 
TGTTCAGTAG AATCGACTGG CGGCTCAATT TACAACGTCA ACACTATCCG TGCTGGCGAG 
CTAGACTTTG GTATCGTGCA ATCGGATTGG CAATACCATG GCTATAACGG TACGAGCAAG 
TTTGCTGAAC AAGGCCCGTA CAAAAAGCTA CGTGCAATGT TCTCTCTTCA TACAGAACCT 
TTTAACATTA TCGCACGTGC AGATTCTGGT ATCGAAAACG TTCAAGACCT TAAAGGTAAA 
CGTGTCAACA TCGGTAACCC AGGCTCTGGT GACCGCGCGA CAATGGGTGT AGTGATGGAT 
GCAATGGGCT GGACAAACGA CAGCTTCAAA CTGGCATCTG AGCTAAAAGG CTCTGAGCGT 
TCACAAGCAC TATGTGACAA CAAGATCGAT GCATTCATCT ACATGGTTGG TCACCCGAAC 
GGTTCAATCA AAGAAGCAAC AACCTCTTGT GATGCAAAAC TTGTCCCAGC GACAGGCGCA 
GAAATCGAAA AGATCGTTGC TAACAACCCT TACTACGCAT TCAGCACAGT ACCTGCTGGC 
ATGTACCGTG GTACTGATAA AGACGTAAAC AGCTTCGGTG TTGCGGCGAC AATGGTAACG 
ACCTCTGATG TTTCAGATGA CGTCGCTTAC AATGTTGCAA AAGCAGTATT CGAAAACTTC 
GACACATTCA AACGTCTACA CCCTGCATTT GCAAACCTGA AGAAAGAAGA CATGGTGAAA 
GCTGGCCTTT CTATCCCTCT TCACCCAGGT GCGGAAAAAT ACTACAAAGA AGTAGGTCTG 
CTTAAGTAA
 
Protein sequence
MAFNKLLKVG AIAAAVMGAG AVNAQEFITI GTGSVTGVYY PTGGAICKLV NKGRKDHNIR 
CSVESTGGSI YNVNTIRAGE LDFGIVQSDW QYHGYNGTSK FAEQGPYKKL RAMFSLHTEP 
FNIIARADSG IENVQDLKGK RVNIGNPGSG DRATMGVVMD AMGWTNDSFK LASELKGSER 
SQALCDNKID AFIYMVGHPN GSIKEATTSC DAKLVPATGA EIEKIVANNP YYAFSTVPAG 
MYRGTDKDVN SFGVAATMVT TSDVSDDVAY NVAKAVFENF DTFKRLHPAF ANLKKEDMVK 
AGLSIPLHPG AEKYYKEVGL LK