| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1040 |
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| Symbol | |
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| ID | 3963639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1100779 |
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| End bp | 1101753 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637915862 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_522313 |
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| Protein GI | 89899842 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAGA AACATTTGTC GATCGCCCTG AGCGCGACCA TGGCCATGTC CGCTGCACTG
ATGTCTGCGC CGGCAATTGC CCAGCAGAAA TTTGTCACCA TGGGCACGGG TGGAGTGACC
GGCGTTTACT ACGCCGTAGG CGGCGCCATT TGCCGCTTGG TCAACAAGGA TCGGGCCAAA
ACCAACTTGC GTTGCTCGGT GGAGTCCACC GGCGGTTCCG CCTATAACGT CAACACCATC
AAGGCCGGCG AGCTTGACTT CGGAATGGCC CAGTCTGACG TGCAATACCA GGGATTCAAG
GGCACGGGCT CGTTCAAGGA GCCGTTTGCC GACATGCGCT CGGTGTTCTC GGTTCATCCC
GAACCATTCA CCTTGGTGGC GCGCAAGGAA GCCAATGTTT CGAACTTCAC AGATTTCAAA
GGCAAACGCC TGAATGTGGG CAATCCGGGC TCAGGAACTC GGGCTGCGAT TGATGAGTTG
CTGGTGGCGT TGAACATGAA GTTGTCAGAC TTCTCGCTCG CCTCCGAATT GAAGGCGGAC
GAACACGGCG CAGCCCTGTG CGACAACAAG ATTGATGGCT TCTTCTTCGG TGTGGGACAC
CCTTCCGCCA ATATTCAAGA CCCGACCACT GCCTGCGCTG CCAAACTGGT GCCTATCACC
GGCCCGGCCG TTGACGCCCT GGTCAAGAAG AACTCGTACT TTGCCTTTGC CACGATTCCC
GGCGGCATGT ATGCCAACAA CCCGCAGCCG ACCAAGACCT ATGGCGTGCT GGCAACAATG
ATCACCTCGG CCAAGGTTCC GGCCGACACG GTGTACGCCA TTACCAAGGC GGTTTTTGAC
AACTTCGACG AATTCAAGAA GCTGCACCCC GCTTTTGCAC ATCTCGACCC CAAACACATG
GTGGTGGACG GCCTGACCGC ACCACTGCAT GAAGGTGCAG CACGTTACTA CCGCGAAAAG
GGCTGGATCA AGTAA
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| Protein sequence | MSKKHLSIAL SATMAMSAAL MSAPAIAQQK FVTMGTGGVT GVYYAVGGAI CRLVNKDRAK
TNLRCSVEST GGSAYNVNTI KAGELDFGMA QSDVQYQGFK GTGSFKEPFA DMRSVFSVHP
EPFTLVARKE ANVSNFTDFK GKRLNVGNPG SGTRAAIDEL LVALNMKLSD FSLASELKAD
EHGAALCDNK IDGFFFGVGH PSANIQDPTT ACAAKLVPIT GPAVDALVKK NSYFAFATIP
GGMYANNPQP TKTYGVLATM ITSAKVPADT VYAITKAVFD NFDEFKKLHP AFAHLDPKHM
VVDGLTAPLH EGAARYYREK GWIK
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