114 homologs were found in PanDaTox collection
for query gene Mext_0239 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0239  TRAP-type uncharacterized transport system periplasmic component-like protein  100 
 
 
453 aa  873    Methylobacterium extorquens PA1  Bacteria  normal  0.264256  normal 
 
 
-
 
NC_011757  Mchl_0184  TRAP-type uncharacterized transport system periplasmic component-like protein  98.9 
 
 
453 aa  865    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.864216  normal  0.611675 
 
 
-
 
NC_011894  Mnod_0107  TRAP-type uncharacterized transport system periplasmic component-like protein  59.95 
 
 
453 aa  467  9.999999999999999e-131  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5654  TRAP-type uncharacterized transport system periplasmic component-like protein  55.33 
 
 
471 aa  453  1.0000000000000001e-126  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4743  TRAP-type uncharacterized transport system periplasmic component-like protein  60.63 
 
 
457 aa  421  1e-116  Methylobacterium sp. 4-46  Bacteria  normal  0.704005  normal 
 
 
-
 
NC_010505  Mrad2831_4219  TRAP-type uncharacterized transport system periplasmic component-like protein  52.91 
 
 
465 aa  387  1e-106  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.340628 
 
 
-
 
NC_010511  M446_2036  TRAP-type uncharacterized transport system periplasmic component-like protein  50 
 
 
463 aa  362  1e-98  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00372211 
 
 
-
 
NC_011894  Mnod_0519  TRAP-type uncharacterized transport system periplasmic component-like protein  50.76 
 
 
463 aa  347  2e-94  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  46.17 
 
 
469 aa  343  5e-93  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_010505  Mrad2831_3542  TRAP-type uncharacterized transport system periplasmic component-like protein  45.48 
 
 
472 aa  340  2e-92  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.919124 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  45.48 
 
 
474 aa  336  5.999999999999999e-91  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  45.48 
 
 
469 aa  336  5.999999999999999e-91  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.301233 
 
 
-
 
NC_010511  M446_2265  TRAP transporter solute receptor TAXI family protein  35.78 
 
 
442 aa  181  2e-44  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00194673 
 
 
-
 
NC_011894  Mnod_0342  TRAP transporter solute receptor, TAXI family  34.81 
 
 
423 aa  177  3e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0450847  n/a   
 
 
-
 
NC_011666  Msil_3025  TRAP transporter solute receptor, TAXI family  31.31 
 
 
441 aa  173  5e-42  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_0100  TRAP transporter solute receptor TAXI family protein  30.77 
 
 
480 aa  171  3e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0409  TRAP transporter solute receptor, TAXI family  28.34 
 
 
462 aa  164  3e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.309942  n/a   
 
 
-
 
NC_007958  RPD_0702  TRAP transporter solute receptor TAXI family protein  28.89 
 
 
480 aa  161  2e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.871087  normal 
 
 
-
 
NC_007925  RPC_2525  TRAP transporter solute receptor TAXI family protein  28.16 
 
 
486 aa  159  8e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.839724  normal  0.154925 
 
 
-
 
NC_010581  Bind_3430  TRAP transporter solute receptor TAXI family protein  32.65 
 
 
461 aa  157  5.0000000000000005e-37  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.199051 
 
 
-
 
NC_010581  Bind_2753  hypothetical protein  30.13 
 
 
433 aa  150  6e-35  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0249  hypothetical protein  28.04 
 
 
448 aa  146  6e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2797  TRAP-type uncharacterized transport system periplasmic component-like protein  28.61 
 
 
485 aa  144  3e-33  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_0899  hypothetical protein  25.87 
 
 
437 aa  140  4.999999999999999e-32  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.727607  normal  0.541745 
 
 
-
 
NC_010511  M446_1581  TRAP transporter solute receptor TAXI family protein  28.7 
 
 
457 aa  137  5e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.193293 
 
 
-
 
NC_011004  Rpal_2087  hypothetical protein  29.04 
 
 
466 aa  135  1.9999999999999998e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073016  n/a   
 
 
-
 
NC_011884  Cyan7425_4597  TRAP transporter solute receptor, TAXI family  24.6 
 
 
454 aa  134  3e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.244351  normal 
 
 
-
 
NC_007298  Daro_2929  hypothetical protein  30.71 
 
 
443 aa  133  5e-30  Dechloromonas aromatica RCB  Bacteria  normal  0.0484025  normal 
 
 
-
 
NC_007778  RPB_3495  hypothetical protein  28.43 
 
 
465 aa  131  3e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0909  hypothetical protein  27.51 
 
 
491 aa  127  4.0000000000000003e-28  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1959  hypothetical protein  28.18 
 
 
467 aa  127  5e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1545  TRAP-type uncharacterized transport system periplasmic component-like protein  27.58 
 
 
468 aa  122  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6537  hypothetical protein  26.48 
 
 
467 aa  121  1.9999999999999998e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.866176  normal 
 
 
-
 
NC_011666  Msil_2760  TRAP transporter solute receptor, TAXI family  25.77 
 
 
433 aa  115  2.0000000000000002e-24  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_5694  TRAP-type uncharacterized transport system periplasmic component-like protein  26.8 
 
 
477 aa  114  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  23.08 
 
 
446 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_4331  TRAP transporter solute receptor, TAXI family  25.69 
 
 
453 aa  110  5e-23  Cyanothece sp. PCC 7425  Bacteria  normal  0.794472  normal 
 
 
-
 
NC_010510  Mrad2831_5881  TRAP-type uncharacterized transport system periplasmic component-like protein  27.15 
 
 
440 aa  94.7  3e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.810377 
 
 
-
 
NC_009783  VIBHAR_00793  hypothetical protein  25.24 
 
 
322 aa  73.2  0.000000000009  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_2063  TRAP transporter solute receptor TAXI family protein  26.55 
 
 
327 aa  72  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.800081  n/a   
 
 
-
 
NC_011312  VSAL_I0356  hypothetical protein  24.48 
 
 
324 aa  72  0.00000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.097907  n/a   
 
 
-
 
NC_013456  VEA_001678  TRAP transporter solute receptor TAXI family precursor  24.44 
 
 
322 aa  70.5  0.00000000007  Vibrio sp. Ex25  Bacteria  normal  0.150837  n/a   
 
 
-
 
NC_009457  VC0395_A2848  immunogenic protein  22.71 
 
 
328 aa  69.3  0.0000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1764  TRAP transporter solute receptor TAXI family protein  25.09 
 
 
323 aa  68.2  0.0000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.513988  normal 
 
 
-
 
NC_009620  Smed_3839  TRAP transporter solute receptor TAXI family protein  25.59 
 
 
327 aa  65.9  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.0135422  normal 
 
 
-
 
NC_008044  TM1040_1252  TRAP transporter solute receptor TAXI family protein  27.34 
 
 
323 aa  65.9  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  0.0250918  normal 
 
 
-
 
NC_010424  Daud_1256  TRAP transporter solute receptor TAXI family protein  27.27 
 
 
344 aa  63.9  0.000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0608  TRAP transporter solute receptor TAXI family protein  28.03 
 
 
326 aa  63.2  0.000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.516133  n/a   
 
 
-
 
NC_011894  Mnod_3511  TRAP-type uncharacterized transport system periplasmic component-like protein  24.81 
 
 
179 aa  62.8  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3688  hypothetical protein  26.78 
 
 
324 aa  62.4  0.00000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.269569 
 
 
-
 
NC_007204  Psyc_0746  TRAP-T family transporter periplasmic substrate binding subunit  25.34 
 
 
344 aa  60.5  0.00000007  Psychrobacter arcticus 273-4  Bacteria  normal  0.842378  normal 
 
 
-
 
NC_007298  Daro_0549  TRAP transporter solute receptor TAXI family protein  24.15 
 
 
441 aa  59.3  0.0000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.973361 
 
 
-
 
NC_007969  Pcryo_0741  TRAP transporter solute receptor TAXI family protein  25.68 
 
 
348 aa  59.7  0.0000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003379  immunogenic protein  23.96 
 
 
323 aa  58.9  0.0000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2064  TRAP transporter solute receptor TAXI family protein  26.62 
 
 
457 aa  57  0.0000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.174076 
 
 
-
 
NC_011662  Tmz1t_0725  TRAP transporter solute receptor, TAXI family  23.31 
 
 
322 aa  57  0.0000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0177  TRAP transporter solute receptor TAXI family protein  26.74 
 
 
326 aa  56.6  0.000001  Chelativorans sp. BNC1  Bacteria  normal  0.811435  n/a   
 
 
-
 
NC_007799  ECH_0645  immunogenic protein  24.14 
 
 
325 aa  55.5  0.000002  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.208055  n/a   
 
 
-
 
NC_008390  Bamb_0717  TRAP-type uncharacterized transport system periplasmic component-like protein  25.74 
 
 
490 aa  55.8  0.000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.482708  n/a   
 
 
-
 
NC_010551  BamMC406_0734  TRAP-type uncharacterized transport system periplasmic component-like protein  25.74 
 
 
496 aa  55.8  0.000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.146583 
 
 
-
 
NC_007951  Bxe_A3881  hypothetical protein  26.28 
 
 
494 aa  55.1  0.000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0798  hypothetical protein  26.23 
 
 
497 aa  53.9  0.000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.375789 
 
 
-
 
NC_010508  Bcenmc03_0810  TRAP transporter solute receptor TAXI family protein  25.44 
 
 
480 aa  53.1  0.00001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.347911  normal 
 
 
-
 
NC_014210  Ndas_4512  TRAP transporter solute receptor, TAXI family  25.4 
 
 
299 aa  52.4  0.00002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2546  TRAP-type uncharacterized transport system periplasmic component-like protein  25.65 
 
 
475 aa  52.4  0.00002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.644539 
 
 
-
 
NC_008060  Bcen_0355  TRAP-type uncharacterized transport system periplasmic component-like  25.15 
 
 
520 aa  51.6  0.00003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.541877  n/a   
 
 
-
 
NC_013173  Dbac_0033  TRAP transporter solute receptor, TAXI family  24.77 
 
 
319 aa  51.6  0.00003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2784  TRAP transporter solute receptor, TAXI family  25.31 
 
 
446 aa  51.6  0.00003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007798  NSE_0237  TRAP transporter solute receptor TAXI family protein  27.65 
 
 
336 aa  51.2  0.00004  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.0860272  n/a   
 
 
-
 
NC_007948  Bpro_2004  TRAP transporter solute receptor TAXI family protein  23.91 
 
 
338 aa  51.2  0.00004  Polaromonas sp. JS666  Bacteria  normal  0.373091  normal 
 
 
-
 
NC_007963  Csal_2671  TRAP transporter solute receptor TAXI family protein  25.68 
 
 
325 aa  51.2  0.00004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0838  TRAP-type uncharacterized transport system periplasmic component-like protein  25.15 
 
 
480 aa  51.2  0.00004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3930  TRAP-type uncharacterized transport system periplasmic component-like  27.03 
 
 
480 aa  50.4  0.00006  Burkholderia sp. 383  Bacteria  normal  0.282648  normal  0.013766 
 
 
-
 
NC_009429  Rsph17025_3267  hypothetical protein  28.4 
 
 
323 aa  50.1  0.00008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.743942 
 
 
-
 
NC_009654  Mmwyl1_1880  TRAP transporter solute receptor TAXI family protein  23.18 
 
 
317 aa  49.7  0.0001  Marinomonas sp. MWYL1  Bacteria  normal  0.460702  normal 
 
 
-
 
NC_006348  BMA2030  hypothetical protein  25.9 
 
 
479 aa  48.9  0.0002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.350637  n/a   
 
 
-
 
NC_007434  BURPS1710b_3203  hypothetical protein  25.9 
 
 
499 aa  48.9  0.0002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3623  TRAP transporter solute receptor TAXI family protein  24.51 
 
 
329 aa  48.5  0.0002  Chelativorans sp. BNC1  Bacteria  normal  0.410742  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0884  hypothetical protein  25.9 
 
 
505 aa  48.9  0.0002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2718  hypothetical protein  25.9 
 
 
479 aa  48.9  0.0002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.929618  n/a   
 
 
-
 
NC_009073  Pcal_0207  TRAP transporter solute receptor TAXI family protein  27.81 
 
 
371 aa  48.5  0.0002  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.979925 
 
 
-
 
NC_009076  BURPS1106A_3187  2-hydroxychromene-2-carboxylate isomerase  25.9 
 
 
499 aa  49.3  0.0002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.636069  n/a   
 
 
-
 
NC_009080  BMA10247_1892  hypothetical protein  25.9 
 
 
505 aa  48.9  0.0002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2418  TRAP-type uncharacterized transport system periplasmic component-like protein  34.02 
 
 
176 aa  48.5  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3149  hypothetical protein  25.54 
 
 
723 aa  48.1  0.0003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1418  hypothetical protein  25.91 
 
 
444 aa  47.4  0.0005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_4067  TRAP transporter solute receptor TAXI family protein  33.68 
 
 
318 aa  47  0.0006  Chelativorans sp. BNC1  Bacteria  normal  0.548232  n/a   
 
 
-
 
NC_009338  Mflv_4419  TRAP transporter solute receptor TAXI family protein  27.04 
 
 
332 aa  47.4  0.0006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.176509  normal  0.291569 
 
 
-
 
NC_012791  Vapar_3678  TRAP transporter solute receptor, TAXI family  25.81 
 
 
464 aa  47  0.0006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3723  TRAP transporter solute receptor TAXI family protein  22.17 
 
 
316 aa  47  0.0007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3954  periplasmic binding protein, putative  30.53 
 
 
316 aa  46.6  0.0009  Pseudomonas putida KT2440  Bacteria  normal  normal  0.391333 
 
 
-
 
NC_007802  Jann_2331  TRAP transporter solute receptor TAXI family protein  23.69 
 
 
322 aa  46.2  0.001  Jannaschia sp. CCS1  Bacteria  normal  0.0699297  normal 
 
 
-
 
NC_008782  Ajs_2606  TRAP transporter solute receptor TAXI family protein  27.34 
 
 
445 aa  46.6  0.001  Acidovorax sp. JS42  Bacteria  normal  0.909099  normal  0.286368 
 
 
-
 
NC_009439  Pmen_2949  TRAP transporter solute receptor TAXI family protein  26.03 
 
 
318 aa  46.2  0.001  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0733999 
 
 
-
 
NC_011992  Dtpsy_1202  TRAP transporter solute receptor TAXI family protein  27.34 
 
 
445 aa  46.6  0.001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02419  hypothetical protein  23.36 
 
 
323 aa  46.2  0.001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_3362  TRAP transporter solute receptor TAXI family protein  27.34 
 
 
332 aa  46.2  0.001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0884862  normal 
 
 
-
 
NC_010511  M446_1253  TRAP transporter solute receptor TAXI family protein  24.11 
 
 
323 aa  46.2  0.001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013923  Nmag_3944  TRAP transporter solute receptor, TAXI family  22.82 
 
 
349 aa  46.2  0.001  Natrialba magadii ATCC 43099  Archaea  normal  0.147713  n/a   
 
 
-
 
NC_009953  Sare_1695  TRAP transporter solute receptor TAXI family protein  26.03 
 
 
315 aa  45.4  0.002  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000228802 
 
 
-
 
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