| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3954 |
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| Symbol | |
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| ID | 1046610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4460534 |
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| End bp | 4461484 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637147364 |
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| Product | periplasmic binding protein, putative |
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| Protein accession | NP_746084 |
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| Protein GI | 26990659 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.391333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCAG CCCTTCGCCT GGCATTGGCC AGCACCTTGT TTGCTGTCAG CGCGGCTGCC
CAGGCCGCAC CGACCTTCAT CAACATCCTC ACAGGCGGTA CCAGTGGCGT CTATTACCCG
GTAGGCGTAG GCATTTCACA GATCTACAGC CACGGCATAG AGGGCAGCAA GACCACGGTG
CAAGCCACCA AGGCCTCGGT AGAGAACCTC AACCTGTTGC AAGCCGGTCG AGGGGAGTTG
GCATTCGCAC TGGGGGATTC GGTGGCAGAT GCCTGGAAGG GCGATGCAGA GGCTGGATTC
AAAACGCCCT TGAAGAAACT CCGTGCCATC GCAGGTACCT ACCCGAACTA CATCCAGATC
GTCGCCAGCA AGGAGTCTGG GATCACATCC CTGTCAGACC TCAAAGGCAA GCGTATCTCG
GTTGGAGCCC CCAAGTCCGG GACAGAACTG AACGCCCGCG CCATCTTCAA AGCTGCGGGG
CTTACCTACC AGGACATGGG AAAAGTTGAA TACCTGCCCT ATGCGGAGTC CGTCGAACTG
ATCAAGAACC GTCAGCTTGA CGCCACGCTG CAATCCTCAG GGCTCGGTCA AGCGGCTATC
CGAGACCTGG CCGCGACCTT GCCGGTAGTG TTCGTGCCTA TCCCTGCCGA GGTCGTGACC
CGCATTGGCA ACAACGCCTA CCAACCCGCC ACCATTCCTG CCAACACCTA TGATGGTCAG
AGTGCGGACG TATCAACGGC GGCCATCAAC AACATCCTCG TCACCCGCGC CGACATCGGC
GATGACCTGG CCTATCAGAT GACCAAGCTG ATATTCGAGA ACCTTCCACG CCTGGTCACG
GCCCACGCTG CAGCGAAAGA TATCCAGGCA GAAAATGCCG CCAAGAACCT GCCCATTCCG
CTGCATCCAG GAGCAGCGAG GTACTTCAAG GAGAAAAACC TGCTCCCCTG A
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| Protein sequence | MNPALRLALA STLFAVSAAA QAAPTFINIL TGGTSGVYYP VGVGISQIYS HGIEGSKTTV
QATKASVENL NLLQAGRGEL AFALGDSVAD AWKGDAEAGF KTPLKKLRAI AGTYPNYIQI
VASKESGITS LSDLKGKRIS VGAPKSGTEL NARAIFKAAG LTYQDMGKVE YLPYAESVEL
IKNRQLDATL QSSGLGQAAI RDLAATLPVV FVPIPAEVVT RIGNNAYQPA TIPANTYDGQ
SADVSTAAIN NILVTRADIG DDLAYQMTKL IFENLPRLVT AHAAAKDIQA ENAAKNLPIP
LHPGAARYFK EKNLLP
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