| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001678 |
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| Symbol | |
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| ID | 8555307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 75377 |
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| End bp | 76345 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646404671 |
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| Product | TRAP transporter solute receptor TAXI family precursor |
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| Protein accession | YP_003284306 |
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| Protein GI | 262392452 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.150837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTTA ACAAACTTCT CAAAGTAGGC GCTATCGCTG CAGCAGTAAT GGGTGCAGGC
GCAGTTAACG CTCAAGAGTT TATTACTATC GGTACTGGCT CTGTTACAGG TGTTTACTAC
CCTACTGGTG GTGCTATCTG TAAATTGGTC AATAAAGGTC GTAAAGAACA CAACATTCGT
TGTTCAGTAG AATCGACTGG CGGCTCTATT TACAACGTTA ACACTATCCG TGCTGGCGAG
TTAGATTTTG GTATCGTGCA ATCGGATTGG CAGTACCACG GCTACAATGG TACGAGTAAG
TTTGCGGAAC AAGGCCCGTA CAAAAAGCTA CGTGCAATGT TCTCTCTTCA TACAGAACCT
TTCAACATCA TTGCTCGTGC AGATTCAGGT ATCGAAAACG TTGAAGACCT AAAAGGTAAG
CGCGTAAACA TCGGTAACCC AGGCTCTGGT GACCGTGCAA CCATGGGCGT TGTTATGGAA
GCGATGGGCT GGACAAACGA CAGCTTCAAA TTGGCTTCTG AGCTAAAGGG CTCTGAGCGT
TCTCAAGCAC TTTGTGACAA CAAAATTGAC GCATTCATTT ACATGGTGGG TCACCCGAAC
GGTTCAATCA AAGAAGCAAC AACATCATGT GATGCTAAGC TAGTTTCTGC AACAGGCCCG
AAAATCGATA AGATTGTTGC TGATAACCCA TACTACGCCT TTAGCTCAGT GCCGGCTGGC
ATGTATCGTG GCACAGACAA AGACGTAAAC AGCTTTGGTG TTGCGGCAAC GATGGTTACA
ACAGCAGACG TTTCAGACGA TGTCGCTTAC AACGTTGCAA AAGCCGTGTT TGAAAACTTC
GATACGTTCA AACGTCTACA CCCTGCGTTT GCAAACCTGA AAAAAGAAGA CATGGTGAAA
GCGGGTCTAT CTATCCCTCT TCACCCAGGT GCAGAAAAAT ACTACAAAGA AGTGGGTCTA
CTTAAGTAA
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| Protein sequence | MAFNKLLKVG AIAAAVMGAG AVNAQEFITI GTGSVTGVYY PTGGAICKLV NKGRKEHNIR
CSVESTGGSI YNVNTIRAGE LDFGIVQSDW QYHGYNGTSK FAEQGPYKKL RAMFSLHTEP
FNIIARADSG IENVEDLKGK RVNIGNPGSG DRATMGVVME AMGWTNDSFK LASELKGSER
SQALCDNKID AFIYMVGHPN GSIKEATTSC DAKLVSATGP KIDKIVADNP YYAFSSVPAG
MYRGTDKDVN SFGVAATMVT TADVSDDVAY NVAKAVFENF DTFKRLHPAF ANLKKEDMVK
AGLSIPLHPG AEKYYKEVGL LK
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