| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3901 |
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| Symbol | |
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| ID | 5371869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 4626324 |
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| End bp | 4627280 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640832162 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001368088 |
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| Protein GI | 153002407 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCA AAAAACGTTT TGTCGCCGTA GGCGCTGCCG TGACACTCAC ACTCAGTGCC
GCCGCTATGG CCGCCGCCCC CGCTTTTATT AACATACTCA CGGGTGGCAC CAGTGGCGTG
TATTACCCTA TTGGTGTAGC CCTATCGCAA CTCTATGGCA CAGGAATCGA AGGTTCTAAA
ACCTCAGTTC AAGCGACGAA AGCCTCGGTA GAAAACCTCA ATCTACTGCA AGCGGGCCGT
GGCGAATTAG CGCTCGCGCT AGGTGACTCA GTCGCAGCCG CTTACCAAGG TGATATTGAT
GCGGGCTTTA AAACGCCGTT GGATAAAATC CGTGTGCTCG CCTCTGCTTA CCCTAACTAT
ATTCAAATTG TTGCCAATAA AGAGTCTGGC ATTAAAACCT TGGCCGATTT AAAAGGGAAA
CGTATCTCTG TCGGCGCACC TAAATCGGGT ACCGAGCTCA ATGCCAGATC AATTTTTAAG
GCGGCTGGTT TAAGCTACGA AGACATGGGT AAGGTCGAGT TTTTACCTTA TGCAGAATCC
GTTGAACTCA TCAAAAATCG TCAGTTAGAT GCGACCTTGC AGTCGTCTGG TCTCGGTATG
GCAGCCATCC GCGATTTAGC GGCGACTATG GCAATCAACT TTGTTGAAAT TCCAGAGGAT
GTGATTGCTA AGATTAACAA CCCTGCCTAT CAACACGGCG TGATCCCAGC ATCGACCTAT
GAAGGCCAAA CCACTGACGT TTCAACCGTT GCCATTCAAA ACCTGCTGGT AACGCAAAGC
GGCGTGTCGG ACGATTTAGC CTATCAAATG ACTAAGATCA TGTTCGAGCA CTTAGATCGT
CTAGGTAACG CGCACTCAGC CGCTAAATCT ATTAGCTTAG AGAAAGCGAC GAAAAATCTG
CCGATACCGC TACACCCAGG TGCAGAGCGT TATTACAAAG AAGTTGGCGC ACTCTAA
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| Protein sequence | MKIKKRFVAV GAAVTLTLSA AAMAAAPAFI NILTGGTSGV YYPIGVALSQ LYGTGIEGSK
TSVQATKASV ENLNLLQAGR GELALALGDS VAAAYQGDID AGFKTPLDKI RVLASAYPNY
IQIVANKESG IKTLADLKGK RISVGAPKSG TELNARSIFK AAGLSYEDMG KVEFLPYAES
VELIKNRQLD ATLQSSGLGM AAIRDLAATM AINFVEIPED VIAKINNPAY QHGVIPASTY
EGQTTDVSTV AIQNLLVTQS GVSDDLAYQM TKIMFEHLDR LGNAHSAAKS ISLEKATKNL
PIPLHPGAER YYKEVGAL
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