Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0356 |
Symbol | |
ID | 6986443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 391308 |
End bp | 392282 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643378735 |
Product | hypothetical protein |
Protein accession | YP_002261888 |
Protein GI | 209693960 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.097907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATTGA AAAACTTAAT TAAAGTAAGT GCTGTTGCAG CAGCAATGCT TGGTGCTGGC ATGGGAACCG CAAGCGCTCA AGAATTTATT ACAATTGGTA CTGGTTCTGT CACCGGTGTT TACTACCCAA CGGGTGGTGC TATTTGTAAG TTAGTGAATA AAGATCGTAA AGAGCATAAT GTTCGTTGTT CTGTTGAGTC CACTGGTGGT TCAATTTATA ACGTAAATAC TATCCGTTCT GGTGAACTTG ATTTTGGTAT CGTGCAATCA GATTGGCAAT ACCATGGCTA TAACGGCACA AGTAAATTTG AAGCTCAAGG TCCTTACAAG AAACTACGTG CAATGTTCTC TCTTCATACT GAACCTTTTA ACATCATTGC TCGTTCTGAT TCCGGTATCA ACGACGTTTC TGATTTAGCC GGAAAACGCG TTAACATTGG TAATCCAGGC TCTGGCGACC GTGCAACAAT GGGTGTTGTG ATGAATGCGA TGGGCTGGAC AAACGACAGC TTTAAACTTG CATCGGAACT AAAAAGCTCT GAGCTTTCAC AAGCGCTTTG TGATAATAAA ATTGATGCCT TCATCTACAT GGTTGGTCAT CCAAATGGCT CAATCAAAGA AGCGACAACA TCGTGTGATG CTAAATTAGT TCCTGCTACT GGTCCTAAGA TCGATAAGAT TGTTGCAGAT AACCCTTATT ACGCTTACAC AACCGTTCCT GCTAGCATGT ACCGTGGAAC AGAAGGCGAT GTAAATAGCT TTGGTGTTGC GGCTACGGTG GTTACGACAT CTGACGTATC AGATGAAGTG GCTTACAGTG TTGCAAAAGC AGTATTTGAA AACTTTAATA CCTTCAAGCG TCTTCACCCT GCGTTTGCTA CGCTGAAAAA AGAAGACATG GTTAAAGCGG GTATTTCTAT TCCATTGCAT CCTGGTGCGG TGAAATATTA CAAAGAAGTT GGTCTACTAA AATAG
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Protein sequence | MALKNLIKVS AVAAAMLGAG MGTASAQEFI TIGTGSVTGV YYPTGGAICK LVNKDRKEHN VRCSVESTGG SIYNVNTIRS GELDFGIVQS DWQYHGYNGT SKFEAQGPYK KLRAMFSLHT EPFNIIARSD SGINDVSDLA GKRVNIGNPG SGDRATMGVV MNAMGWTNDS FKLASELKSS ELSQALCDNK IDAFIYMVGH PNGSIKEATT SCDAKLVPAT GPKIDKIVAD NPYYAYTTVP ASMYRGTEGD VNSFGVAATV VTTSDVSDEV AYSVAKAVFE NFNTFKRLHP AFATLKKEDM VKAGISIPLH PGAVKYYKEV GLLK
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