| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2525 |
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| Symbol | |
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| ID | 3970991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2735714 |
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| End bp | 2737174 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925633 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_532395 |
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| Protein GI | 90424025 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.839724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.154925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTCCA GCCTCGAACG ATTGTTTTCC AGACAGATCG TGGATGGCCC TGACCCGGTG
GGACCCACGG TGCAATCGGT ATCGCGTTCT CGACGACAAA AAGCCGCCTT CGTGGTGCTG
GCCGCGGTGC TCGCCGTGGT CGGCGCGGTG GCCGGCGCCT ATTACTTTGC GATGCGGCCG
GAGACGCTGC GCATTGCGGT GGGACCGCAG AATTCCGACG ACGTCCGGGT GGTGCAGGCG
CTGACCCAGG CGTTCGCCCG CGACCACAAT TCGGTGCGGC TGCGCCCGGT GTTGACCGAC
GGCGCGCTCG GCAGCGCCAC CGCGCTGGCC GACGGCAAGG CCGACCTGGC GGTGATCCGC
GGCGACCTCG AAGTGCCGAA GAACGCCCAG GCGGTGGCGG TGCTGCGCAA GAACGTCGCG
GTGCTGTGGG TGCCGGCCAA GCCGAAGTCC GCGTCCAAGG CCAAGAAGGC CGCGGCCAAG
ATCAGCAAGA TCGCGCAGCT CGACGGCAAG CGGATCGGCA TCATCGGCCG CACCCAGGCC
AATGTGAACC TTTTGAAAGT GGTGCTGCAG CAATACGGCG TCGATCCGGC CAAGGTCGAC
ATCGTGCAGT TCTCCACCAG CGAGGTCGCC GAGGCGATCA AGGACCAGAA GGTCGACGCC
TTCCTGGCGG CCGGCCCGGT CAACAGCAAG ATTACCGCCG ACGCCATCGC CGCCTCGATC
CGGGAGGGCG GCGCGCCGAC TTTCCTGCCG ATCGATTCCG CCGAGGCGAT CGCGCAGAAC
CATCCGATGT ACGAGGCCGC GGAAATTCCC GCCGGGGTGT TCGGCGGCGC GCCGGCGCGG
CCGGAGGACG AGGTCAAGAC CATCAGCTTC GCGCACCACA TCGTGGCGCG GAAGGGGCTG
CCGGACCCCA CCGTCTCGGC GTTCACCCGG CAATTGTTCG CGATCCGCCA GACCGTGATG
AACGAATTCC CGCTGGCGGC GAAGATCGAG ACCCCGGATA CCGACAAGGA CGCCGCGATC
CCGGTGCATC CGGGTGCTGC GGCGTATGTT GACGGCGAGG AGAAGACCTT CCTCGACCGC
TACAGCGATT ACATCTGGTG GTCGCTGATG GGCGCCTCGG CGCTGGGCTC GATCGGCGCC
TGGTTCGCCG GCTATCTGCG CAAGGACGAG CGCACCAACA ACTCCTGGCT GCGCGAGCGG
CTGCTCGACA TGATCGCGAT GGCCAGGAAG AGCGATTCGA CCGACGAACT CGACGCCATG
CAGGCCGAGG CCGACAACAT CCTGCGCGAT ACGCTGACCT GCTTCGAGAA CGGCGCGATC
GAGGAGGGCA CCCTGACCGC GTTCAACATC GCGCTGGAGC AGTTCCACAA CGCGGTGGCC
GACCGCAAGG CGCTGCTGGC GCTGGCGCCG CAAAGCCCGC CGCGCGCCAA CGTGCAGTTG
CTGGCGGGCA GCGGCCTGTA G
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| Protein sequence | MGSSLERLFS RQIVDGPDPV GPTVQSVSRS RRQKAAFVVL AAVLAVVGAV AGAYYFAMRP
ETLRIAVGPQ NSDDVRVVQA LTQAFARDHN SVRLRPVLTD GALGSATALA DGKADLAVIR
GDLEVPKNAQ AVAVLRKNVA VLWVPAKPKS ASKAKKAAAK ISKIAQLDGK RIGIIGRTQA
NVNLLKVVLQ QYGVDPAKVD IVQFSTSEVA EAIKDQKVDA FLAAGPVNSK ITADAIAASI
REGGAPTFLP IDSAEAIAQN HPMYEAAEIP AGVFGGAPAR PEDEVKTISF AHHIVARKGL
PDPTVSAFTR QLFAIRQTVM NEFPLAAKIE TPDTDKDAAI PVHPGAAAYV DGEEKTFLDR
YSDYIWWSLM GASALGSIGA WFAGYLRKDE RTNNSWLRER LLDMIAMARK SDSTDELDAM
QAEADNILRD TLTCFENGAI EEGTLTAFNI ALEQFHNAVA DRKALLALAP QSPPRANVQL
LAGSGL
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