Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4226 |
Symbol | |
ID | 4024747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4692917 |
End bp | 4693870 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637964432 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_571344 |
Protein GI | 91978685 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0963703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.823727 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCCA GATTTTTGGG CATTGCCGTG GCGTCGGCCG CGGTCCTGTC GGTGTCGGCG CCGTTGGCCC ACGCCCAGCA ATTCGTCAAC GTGCTGACCG GCGGAACCTC GGGCGTGTAT TATCCGCTCG GCGTCGCGAT CGCGAAAATT TACGGCGAGA AGATCCCCAA TGTGAAGTCT CAGGTCCAGG CCACCAAGGC GTCGGTCGAG AATTTGAATC TGCTGCAGCA GGGCCGCGGC GAGATCGCCT TCACCCTCGG CGACTCGCTC AAGGCCGCAT GGGACGGTGA CGCCGAAGCC GGCTTCAAGG CCAAGCTCGA CAAGCTGCGG GTGATCGGCG CGATCTATCC GAACTACATC CAGATCGTTT CGACCGCGGA GTCCGGGATC AAGACGCTTG CCGATCTCAA GGGCAAGAGC CTGTCGGTCG GCGCGCCGAA GTCCGGCACC GAGCTGAATT CGCGGGCGAT CCTGAAGGCC GCCGGAATGG AGTACAAGGA TCTCGGCAAG GTCGAGTATC TGCCGTTTGC CGAATCCGTC GACCTGATGA AAAATCGCCA ACTCGCCGCC ACGCTGCAGT CGGCCGGCCT CGGCGTCGCT TCGCTGAAGG ATCTCAGCAA TTCGTCCGAA GTCAATGTGG TGTCGGTGCC GAAGGAGATC GTCGACAAGA TCGGCCCGCC GTTCATCGCC GAGACGATCC CGGCCGGCAC CTATAAGGGC CAAGACAAGG ACGTCCCGAC CGCAGCGGTG GTGAACTATC TCGTCACCAG CAGCGCGGTG TCCGACGACC TCGCTTATCA GATGACCAAG CTGGTCTATG ACGCGCTCCC GGAACTCGCC AGCGCTCACT CCGCCGGCAA GGGCATCAAG CTCGAGACCG CCGCCACCGA CAGCCCGGTT CCGTTGCACC CCGGTGCCAT CAAGTACTTC AAGGAAAAGG GCGTGCTGAA GTAG
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Protein sequence | MKARFLGIAV ASAAVLSVSA PLAHAQQFVN VLTGGTSGVY YPLGVAIAKI YGEKIPNVKS QVQATKASVE NLNLLQQGRG EIAFTLGDSL KAAWDGDAEA GFKAKLDKLR VIGAIYPNYI QIVSTAESGI KTLADLKGKS LSVGAPKSGT ELNSRAILKA AGMEYKDLGK VEYLPFAESV DLMKNRQLAA TLQSAGLGVA SLKDLSNSSE VNVVSVPKEI VDKIGPPFIA ETIPAGTYKG QDKDVPTAAV VNYLVTSSAV SDDLAYQMTK LVYDALPELA SAHSAGKGIK LETAATDSPV PLHPGAIKYF KEKGVLK
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