50 homologs were found in PanDaTox collection
for query gene RPD_1959 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_3495  hypothetical protein  84.91 
 
 		 465 aa  751    Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_2087  hypothetical protein  74.51 
 
 		 466 aa  647    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073016  n/a   
 
 
-
 
NC_007958  RPD_1959  hypothetical protein  100 
 
 		 467 aa  936    Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_0909  hypothetical protein  57.35 
 
 		 491 aa  442  1e-123  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_2525  TRAP transporter solute receptor TAXI family protein  50.93 
 
 		 486 aa  429  1e-119  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.839724  normal  0.154925 
 
 
-
 
NC_009485  BBta_0249  hypothetical protein  50.57 
 
 		 448 aa  422  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_0100  TRAP transporter solute receptor TAXI family protein  48.63 
 
 		 480 aa  408  1.0000000000000001e-112  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_0702  TRAP transporter solute receptor TAXI family protein  48.52 
 
 		 480 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.871087  normal  1 
 
 
-
 
NC_009485  BBta_6537  hypothetical protein  52.78 
 
 		 467 aa  400  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.866176  normal  1 
 
 
-
 
NC_011004  Rpal_0409  TRAP transporter solute receptor, TAXI family  48.31 
 
 		 462 aa  398  1e-109  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.309942  n/a   
 
 
-
 
NC_010511  M446_2265  TRAP transporter solute receptor TAXI family protein  35.65 
 
 		 442 aa  227  3e-58  Methylobacterium sp. 4-46  Bacteria  normal  1  decreased coverage  0.00194673 
 
 
-
 
NC_011894  Mnod_0342  TRAP transporter solute receptor, TAXI family  35.9 
 
 		 423 aa  221  3e-56  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0450847  n/a   
 
 
-
 
NC_011666  Msil_3025  TRAP transporter solute receptor, TAXI family  32.27 
 
 		 441 aa  188  1e-46  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011666  Msil_2797  TRAP-type uncharacterized transport system periplasmic component-like protein  31.23 
 
 		 485 aa  169  1e-40  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010511  M446_2036  TRAP-type uncharacterized transport system periplasmic component-like protein  30.45 
 
 		 463 aa  169  1e-40  Methylobacterium sp. 4-46  Bacteria  normal  1  hitchhiker  0.00372211 
 
 
-
 
NC_010581  Bind_0899  hypothetical protein  29.02 
 
 		 437 aa  167  4e-40  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.727607  normal  0.541745 
 
 
-
 
NC_010511  M446_1545  TRAP-type uncharacterized transport system periplasmic component-like protein  32.18 
 
 		 468 aa  165  2.0000000000000002e-39  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_0519  TRAP-type uncharacterized transport system periplasmic component-like protein  29.44 
 
 		 463 aa  158  2e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_3542  TRAP-type uncharacterized transport system periplasmic component-like protein  29 
 
 		 472 aa  156  9e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.919124 
 
 
-
 
NC_010581  Bind_3430  TRAP transporter solute receptor TAXI family protein  30.2 
 
 		 461 aa  154  2.9999999999999998e-36  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.199051 
 
 
-
 
NC_010511  M446_1581  TRAP transporter solute receptor TAXI family protein  30.86 
 
 		 457 aa  154  2.9999999999999998e-36  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.193293 
 
 
-
 
NC_011894  Mnod_5694  TRAP-type uncharacterized transport system periplasmic component-like protein  30.69 
 
 		 477 aa  151  2e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_2929  hypothetical protein  25.92 
 
 		 443 aa  147  3e-34  Dechloromonas aromatica RCB  Bacteria  normal  0.0484025  normal  1 
 
 
-
 
NC_011666  Msil_2760  TRAP transporter solute receptor, TAXI family  28.77 
 
 		 433 aa  144  2e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  28.12 
 
 		 469 aa  144  3e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.301233 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  27.74 
 
 		 474 aa  144  4e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  27.15 
 
 		 469 aa  143  7e-33  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_010581  Bind_2753  hypothetical protein  26.79 
 
 		 433 aa  138  2e-31  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_0107  TRAP-type uncharacterized transport system periplasmic component-like protein  28.17 
 
 		 453 aa  132  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_0184  TRAP-type uncharacterized transport system periplasmic component-like protein  28.57 
 
 		 453 aa  130  5.0000000000000004e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.864216  normal  0.611675 
 
 
-
 
NC_010505  Mrad2831_5654  TRAP-type uncharacterized transport system periplasmic component-like protein  26.4 
 
 		 471 aa  129  9.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0239  TRAP-type uncharacterized transport system periplasmic component-like protein  28.83 
 
 		 453 aa  129  1.0000000000000001e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.264256  normal  1 
 
 
-
 
NC_010510  Mrad2831_5881  TRAP-type uncharacterized transport system periplasmic component-like protein  29 
 
 		 440 aa  124  4e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.810377 
 
 
-
 
NC_010505  Mrad2831_4219  TRAP-type uncharacterized transport system periplasmic component-like protein  27.01 
 
 		 465 aa  121  3e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.340628 
 
 
-
 
NC_010511  M446_4743  TRAP-type uncharacterized transport system periplasmic component-like protein  27.41 
 
 		 457 aa  103  5e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.704005  normal  1 
 
 
-
 
NC_011884  Cyan7425_4597  TRAP transporter solute receptor, TAXI family  21.87 
 
 		 454 aa  99.4  1e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.244351  normal  1 
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  22.07 
 
 		 446 aa  94  5e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_011884  Cyan7425_4331  TRAP transporter solute receptor, TAXI family  21.43 
 
 		 453 aa  86.3  0.000000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.794472  normal  1 
 
 
-
 
NC_011894  Mnod_3511  TRAP-type uncharacterized transport system periplasmic component-like protein  32.33 
 
 		 179 aa  82.8  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_2418  TRAP-type uncharacterized transport system periplasmic component-like protein  35.71 
 
 		 176 aa  67  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_3213  TRAP transporter solute receptor TAXI family protein  22.9 
 
 		 325 aa  59.3  0.0000001  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_1697  TRAP transporter solute receptor TAXI family protein  24.08 
 
 		 330 aa  54.3  0.000005  Salinispora tropica CNB-440  Bacteria  normal  0.607751  normal  0.828936 
 
 
-
 
NC_008554  Sfum_3723  TRAP transporter solute receptor TAXI family protein  22.51 
 
 		 316 aa  52.8  0.00001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_1445  TRAP transporter solute receptor, TAXI family  26.56 
 
 		 307 aa  53.1  0.00001  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_5695  TRAP transporter solute receptor, TAXI family  25.08 
 
 		 308 aa  52.8  0.00001  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_1695  TRAP transporter solute receptor TAXI family protein  24.91 
 
 		 315 aa  52.4  0.00002  Salinispora arenicola CNS-205  Bacteria  normal  1  decreased coverage  0.000228802 
 
 
-
 
NC_007799  ECH_0645  immunogenic protein  22.3 
 
 		 325 aa  48.9  0.0002  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.208055  n/a   
 
 
-
 
NC_007963  Csal_0386  TRAP transporter solute receptor TAXI family protein  25.97 
 
 		 375 aa  47.8  0.0005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010424  Daud_1256  TRAP transporter solute receptor TAXI family protein  24.75 
 
 		 344 aa  45.1  0.003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_2365  TRAP transporter solute receptor, TAXI family  21.39 
 
 		 328 aa  44.3  0.004  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
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