Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2087 |
Symbol | |
ID | 6409747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2260566 |
End bp | 2261966 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642711972 |
Product | hypothetical protein |
Protein accession | YP_001991084 |
Protein GI | 192290479 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.073016 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATCCC CGGACGGTAG TGGCAGCGAG AGTTTCCGCA CGCGGCGGCG CCGTAATCGC GCCCGTTTTG CACTGGCGGC GGTGCTAACC TTCATTCTGG TTGCGGTCGG CGTGCTCGCC TTGGTGTTCT ACGAGTTACG ACCCGTCAGC CTGAAGATCG CTGTCGGGCC GGGAGGCGGC GACGATCTGA AGCTGGTGCA AGCATTGGCC CAGAGTTTTG CGCGGGATCG CGCTGCCGTG CGGCTGGTGC CATTGGTGAC CGGTGGGGCG ACGCCGAGCA TCGAGGCGTT TCGCGACCAC AAGGCGGACC TCGCGGTCAC CCGGGCCGAT CTTGATCTGC CTGCCGACGC GCAGGCGGTG GCGGTGCTGC GCAAGAACGT GGTGGTGCTG TGGGCGCCAT CGTCGGCCGG CAAGGGCAAG AAGTCGATCA AGACCATCAC CGATCTGGCA GGCCGCCGGG TCGGCGTGAT TGGGCGGACG CCGGCCAACG TCAAACTGTT CGACATCATT CTGGCCGAGT CCGGCGTCGC GCCCGACAAG GTCCAGAAGG AGCAGTTCGC CACCGGCCAG CTCGCCGAGA TGGCGCGCGA TCCGTCGCTC GACGCGTTTC TGGCGGTCGG GCCGCTCGAC AGCAAGATCA CCGGCGAAGC GATCGCCGCC ACCGCGAAGG CGCGGGGCGA GCCGCGGTTC CTACCGGTCG ATGTTGGTGA TGCCATCGCC AAGAAGTATC CGATCTACGA TTCCGAGGAG ATTCCGGGCA GCATCTTCTC CACCCAGCCG GCGCGGCCCG AGGACAAGGT CGATACCGTC AGCGTCAACC ATCTGATCAT TGCTCGGCAG TCGCTGTCCT CCGTGACGGT GACCAAGCTG ACGCGGCAGA TCTTCGCCGC CCGGCAGCAG ATCGCCCGCG AGATGCCGCT CGCCGGCAAG ATCGAAGCGC CGGACACCGA GAAGGACGCG GCGCTGCCGG CGCATCGCGG CGCCGCCGCG TTCATCGACG GCACCGACCG CACCTTCATG GAGCGCAACA GCGATTACAT CTGGGGCTTG GTGCTGCTGC TGTCCGGCCT CGGCTCGGCC GGCGCCTGGT TTCGCAGCTA TTTGACCCGC GACGAGCGGG AAGCCGGCGC CAAGATGCGC GACCGCGCGC TCGCCATGGT GTCCAAGGCG CGGAAAGCGG AGACGCTGGA GGCGCTGGAC GCGTTGCAGC ATGAGATCGA CAAGATCCTT CGTGACACGC TGGATTGCTA CGACGACGGT GCGATCGAGG ATCTCGAGCC GTTCAGCCTG GTGCTGGAGC AGTTCCACCA CGCGGTGGTG GACCGCCGTG CCGCGTTGAG CGCTTCCGGC CCGGGGCTGG TTCCGGCTGA TCCGGCGACA CTGCCGGCCG CCCGCGCCTG A
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Protein sequence | MASPDGSGSE SFRTRRRRNR ARFALAAVLT FILVAVGVLA LVFYELRPVS LKIAVGPGGG DDLKLVQALA QSFARDRAAV RLVPLVTGGA TPSIEAFRDH KADLAVTRAD LDLPADAQAV AVLRKNVVVL WAPSSAGKGK KSIKTITDLA GRRVGVIGRT PANVKLFDII LAESGVAPDK VQKEQFATGQ LAEMARDPSL DAFLAVGPLD SKITGEAIAA TAKARGEPRF LPVDVGDAIA KKYPIYDSEE IPGSIFSTQP ARPEDKVDTV SVNHLIIARQ SLSSVTVTKL TRQIFAARQQ IAREMPLAGK IEAPDTEKDA ALPAHRGAAA FIDGTDRTFM ERNSDYIWGL VLLLSGLGSA GAWFRSYLTR DEREAGAKMR DRALAMVSKA RKAETLEALD ALQHEIDKIL RDTLDCYDDG AIEDLEPFSL VLEQFHHAVV DRRAALSASG PGLVPADPAT LPAARA
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