Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0461 |
Symbol | |
ID | 4250796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 524240 |
End bp | 525196 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638117020 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_732598 |
Protein GI | 113968805 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATCA ACAAACGTTT TATCGCCGTT GGCGCAGCAT TAACGCTCTC ACTCAGCGCA GCCTCAATGG CGGCCGCACC TGCCTTTATC AATATCTTAA CTGGCGGCAC CAGTGGCGTG TATTACCCCA TTGGTGTGGC ATTGTCGCAG CTCTATGGCT CAGGCATTGA AGGCGCCAAA ACCTCAGTGC AGGCCACTAA AGCCTCGGTT GAAAACCTCA ATTTGCTGCA AGCGGGCCGT GGTGAATTGG CCTTAGCCTT AGGCGATTCT GTGGCTGCTG CCTATCAAGG CGATGCCGAT GCCGGCTTTA AAAAGCCATT AGATAAGGTG CGCGTGCTCG CAGCCGCTTA CCCTAACTAC ATTCAAATTG TGGCCAATAA GGAGTCTGGC ATCAAAACCT TAGCCGATTT GAAAGGTAAA CGTATTTCTG TCGGTGCGCC TAAGTCGGGC ACAGAACTCA ACGCGCGCGC CATTTTTAAA GCCGCGGGTT TAAGCTACGA AGACATGGGC AAAGTGGAGT TTTTACCCTA TGCCGAATCG GTCGAGCTAA TTAAGAACCG TCAGTTAGAT GCGACCTTAC AATCTTCGGG CTTAGGTATG GCAGCGATCC GCGATTTAGC CGCGACTATG CCAATCAACT TTGTGGAAAT TCCCGAAGAT GTGATCGGCA AAATCAATAA TCCCGCCTAC CAACATGGAG TGATCCCAGC AGCCACCTAC GAAGGCCAAA CCGCCGATGT CTCTACGGTT GCTATTCAAA ACCTCTTTGT GACTCAAACT GGTGTGTCTG ACGATTTAGC CTATCAGATG ACTAAACTGA TGTTTGAGCA TTTAGATCGC CTCGGCAACG CCCACTCAGC GGCGAAAGCC ATTCAATTAG ACAAGGCAAC CAAAAACCTG CCTGCGCCAC TGCACCCAGG TGCTGAGCGT TATTTCAAAG AAGTTGGCGC ACTCTAA
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Protein sequence | MKINKRFIAV GAALTLSLSA ASMAAAPAFI NILTGGTSGV YYPIGVALSQ LYGSGIEGAK TSVQATKASV ENLNLLQAGR GELALALGDS VAAAYQGDAD AGFKKPLDKV RVLAAAYPNY IQIVANKESG IKTLADLKGK RISVGAPKSG TELNARAIFK AAGLSYEDMG KVEFLPYAES VELIKNRQLD ATLQSSGLGM AAIRDLAATM PINFVEIPED VIGKINNPAY QHGVIPAATY EGQTADVSTV AIQNLFVTQT GVSDDLAYQM TKLMFEHLDR LGNAHSAAKA IQLDKATKNL PAPLHPGAER YFKEVGAL
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