Gene Shewmr4_0461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0461 
Symbol 
ID4250796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp524240 
End bp525196 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content50% 
IMG OID638117020 
ProductTRAP transporter solute receptor TAXI family protein 
Protein accessionYP_732598 
Protein GI113968805 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCA ACAAACGTTT TATCGCCGTT GGCGCAGCAT TAACGCTCTC ACTCAGCGCA 
GCCTCAATGG CGGCCGCACC TGCCTTTATC AATATCTTAA CTGGCGGCAC CAGTGGCGTG
TATTACCCCA TTGGTGTGGC ATTGTCGCAG CTCTATGGCT CAGGCATTGA AGGCGCCAAA
ACCTCAGTGC AGGCCACTAA AGCCTCGGTT GAAAACCTCA ATTTGCTGCA AGCGGGCCGT
GGTGAATTGG CCTTAGCCTT AGGCGATTCT GTGGCTGCTG CCTATCAAGG CGATGCCGAT
GCCGGCTTTA AAAAGCCATT AGATAAGGTG CGCGTGCTCG CAGCCGCTTA CCCTAACTAC
ATTCAAATTG TGGCCAATAA GGAGTCTGGC ATCAAAACCT TAGCCGATTT GAAAGGTAAA
CGTATTTCTG TCGGTGCGCC TAAGTCGGGC ACAGAACTCA ACGCGCGCGC CATTTTTAAA
GCCGCGGGTT TAAGCTACGA AGACATGGGC AAAGTGGAGT TTTTACCCTA TGCCGAATCG
GTCGAGCTAA TTAAGAACCG TCAGTTAGAT GCGACCTTAC AATCTTCGGG CTTAGGTATG
GCAGCGATCC GCGATTTAGC CGCGACTATG CCAATCAACT TTGTGGAAAT TCCCGAAGAT
GTGATCGGCA AAATCAATAA TCCCGCCTAC CAACATGGAG TGATCCCAGC AGCCACCTAC
GAAGGCCAAA CCGCCGATGT CTCTACGGTT GCTATTCAAA ACCTCTTTGT GACTCAAACT
GGTGTGTCTG ACGATTTAGC CTATCAGATG ACTAAACTGA TGTTTGAGCA TTTAGATCGC
CTCGGCAACG CCCACTCAGC GGCGAAAGCC ATTCAATTAG ACAAGGCAAC CAAAAACCTG
CCTGCGCCAC TGCACCCAGG TGCTGAGCGT TATTTCAAAG AAGTTGGCGC ACTCTAA
 
Protein sequence
MKINKRFIAV GAALTLSLSA ASMAAAPAFI NILTGGTSGV YYPIGVALSQ LYGSGIEGAK 
TSVQATKASV ENLNLLQAGR GELALALGDS VAAAYQGDAD AGFKKPLDKV RVLAAAYPNY
IQIVANKESG IKTLADLKGK RISVGAPKSG TELNARAIFK AAGLSYEDMG KVEFLPYAES
VELIKNRQLD ATLQSSGLGM AAIRDLAATM PINFVEIPED VIGKINNPAY QHGVIPAATY
EGQTADVSTV AIQNLFVTQT GVSDDLAYQM TKLMFEHLDR LGNAHSAAKA IQLDKATKNL
PAPLHPGAER YFKEVGAL