| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1252 |
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| Symbol | |
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| ID | 4077646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1347286 |
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| End bp | 1348257 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006560 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_613247 |
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| Protein GI | 99081093 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0250918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCTCA AGCACACACT TCTTGCATCT GCTGCAACTG TTGCGCTCGG CTTTGCCGGG
GCGGCGTCCG CGGCTGAACA GCAGTTCATC ACCATCGGCA CCGGTGGCGT GACCGGCGTT
TACTACCCTA CGGGTGGCGC GATCTGCCGT CTGGTGAACA AAGACCGCAA AGAGCACGGC
ATTCGCTGCT CCGTGGAATC CACCGGTGGT TCCGTTTACA ACACCCGCAC CATCCGTGAA
GGCGAGCTGG AGTTCGGCGT TGTCCAGTCC GACGTTCAGA AGGCTGGTCT CGACGGCACC
GGCGCATTTG AAGCAGACGG CCCGTTCGAA GGTCTGCGCG CTCTGTTCTC GGTCCACCCG
GAGCCGATGC ACCTGATGGC GCGCAAGGAT GCGGAAATCG CCTCCGTCGA CGATCTGAAG
GGCAAGAAAG TCAACATCGC GAACCCCGGC TCCGGGACCC GCGTTCTGGC CGAAACCCTG
ATGAAATACT CCGGTCTGAC CACCGATGAT TTTGCGCTGG CAGCAGAGCT GAAGTCCTCC
GAGCAGGCCG CGGCGCTGTG CGACGGCAAG ATCGACGCAA CCATCTGGGC CTCCGGTCTG
CCGAATGGTT CGAGCCAGGA AGCGACCTCG TCCTGTGACG TGAACATCGT TCCGCTGTCC
GGTGAAAACA TTGACACTCT GCTGGCAGAG AACACGCCGT ACGCAGCCGC AACCATCCCC
GGTGGCATGT ATCCGGGTAA CCCGGACGAC ATTCCGTCCT GGGGCCCCAA AGCAACCTTC
GTGACCTCCG CTGACGTCTC CGACGAGGTG GTCTACGCTG TTGTAAGCGC GGTCTTCGAA
AACTTCGACG ACTTCAAAAA GCTGCATCCG GCTTTCTCCC GTCTCTCCGA AGAAGAGATG
GTGAGCGACG CACTGTCGGC TGAAATCCAC CCCGGCGCGA TGAAGTACTA CAAAGAGCGC
GGCTGGAAGT GA
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| Protein sequence | MVLKHTLLAS AATVALGFAG AASAAEQQFI TIGTGGVTGV YYPTGGAICR LVNKDRKEHG
IRCSVESTGG SVYNTRTIRE GELEFGVVQS DVQKAGLDGT GAFEADGPFE GLRALFSVHP
EPMHLMARKD AEIASVDDLK GKKVNIANPG SGTRVLAETL MKYSGLTTDD FALAAELKSS
EQAAALCDGK IDATIWASGL PNGSSQEATS SCDVNIVPLS GENIDTLLAE NTPYAAATIP
GGMYPGNPDD IPSWGPKATF VTSADVSDEV VYAVVSAVFE NFDDFKKLHP AFSRLSEEEM
VSDALSAEIH PGAMKYYKER GWK
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