More than 300 homologs were found in PanDaTox collection
for query gene Mboo_1488 on replicon NC_009712
Organism: Candidatus Methanoregula boonei 6A8



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009712  Mboo_1488  response regulator receiver protein  100 
 
 
450 aa  906    Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  57.84 
 
 
450 aa  521  1e-146  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  51.64 
 
 
257 aa  136  8e-31  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  44.19 
 
 
429 aa  132  2.0000000000000002e-29  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  50.43 
 
 
130 aa  131  3e-29  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  51.2 
 
 
131 aa  130  6e-29  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  48 
 
 
498 aa  127  4.0000000000000003e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  47.2 
 
 
135 aa  124  3e-27  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  45.74 
 
 
591 aa  123  6e-27  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  47.58 
 
 
343 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  45.31 
 
 
316 aa  122  9.999999999999999e-27  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  47.58 
 
 
499 aa  122  1.9999999999999998e-26  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  47.9 
 
 
143 aa  121  3e-26  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  43.75 
 
 
474 aa  120  3.9999999999999996e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  46.88 
 
 
953 aa  120  6e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  41.94 
 
 
455 aa  119  7.999999999999999e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  45.6 
 
 
380 aa  119  9e-26  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  42.64 
 
 
377 aa  116  7.999999999999999e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  41.13 
 
 
455 aa  116  7.999999999999999e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  43.94 
 
 
355 aa  115  1.0000000000000001e-24  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.84 
 
 
701 aa  115  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  43.44 
 
 
359 aa  115  2.0000000000000002e-24  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  41.98 
 
 
817 aa  114  2.0000000000000002e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  47.9 
 
 
373 aa  115  2.0000000000000002e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  37.59 
 
 
989 aa  114  3e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  40.16 
 
 
337 aa  114  3e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  44.44 
 
 
636 aa  114  3e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  43.59 
 
 
384 aa  113  6e-24  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  41.3 
 
 
238 aa  113  8.000000000000001e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  38.46 
 
 
603 aa  112  1.0000000000000001e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  38.35 
 
 
989 aa  112  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  43.55 
 
 
461 aa  112  2.0000000000000002e-23  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  45.69 
 
 
352 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  45.3 
 
 
340 aa  112  2.0000000000000002e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  39.84 
 
 
472 aa  110  4.0000000000000004e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  41.98 
 
 
521 aa  110  5e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  45.38 
 
 
404 aa  110  6e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  42.22 
 
 
182 aa  110  7.000000000000001e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  39.26 
 
 
245 aa  110  7.000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  40.14 
 
 
352 aa  110  7.000000000000001e-23  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  32.35 
 
 
255 aa  109  1e-22  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  38.52 
 
 
386 aa  109  1e-22  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.81 
 
 
426 aa  108  2e-22  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  41.41 
 
 
376 aa  107  3e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  45.38 
 
 
197 aa  106  1e-21  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  40.14 
 
 
336 aa  106  1e-21  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  36.36 
 
 
429 aa  105  2e-21  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  38.89 
 
 
458 aa  105  2e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  40.16 
 
 
157 aa  104  4e-21  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  36.23 
 
 
258 aa  102  1e-20  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.8 
 
 
701 aa  102  2e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  40 
 
 
122 aa  101  2e-20  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  44.07 
 
 
191 aa  101  2e-20  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  42.4 
 
 
263 aa  102  2e-20  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  38.66 
 
 
667 aa  101  2e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  38.66 
 
 
571 aa  101  3e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  43.48 
 
 
126 aa  100  5e-20  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  43.48 
 
 
122 aa  99.4  1e-19  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  42.37 
 
 
200 aa  98.6  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  43.59 
 
 
261 aa  99  2e-19  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  41.18 
 
 
194 aa  99  2e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  41.18 
 
 
194 aa  98.2  3e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  39.53 
 
 
194 aa  97.8  4e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  38.89 
 
 
469 aa  97.1  7e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.92 
 
 
704 aa  97.1  7e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  45.87 
 
 
134 aa  96.3  9e-19  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_007955  Mbur_0883  response regulator receiver  41.04 
 
 
273 aa  95.5  2e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  39.84 
 
 
311 aa  95.5  2e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  38.98 
 
 
195 aa  93.6  6e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_009712  Mboo_1609  response regulator receiver protein  42.98 
 
 
463 aa  93.6  6e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.672475  normal  0.374216 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  35.83 
 
 
471 aa  93.2  9e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.07 
 
 
561 aa  92.8  1e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  39.32 
 
 
256 aa  92.4  1e-17  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  39.84 
 
 
387 aa  91.7  2e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_009712  Mboo_1517  response regulator receiver protein  43.97 
 
 
127 aa  91.3  3e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.394491  normal  0.160821 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  35.22 
 
 
199 aa  90.5  5e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  41.53 
 
 
205 aa  90.5  5e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  39.83 
 
 
204 aa  89.7  8e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  38.06 
 
 
198 aa  89.4  1e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  39.83 
 
 
194 aa  89.4  1e-16  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  87.4  5e-16  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  37.61 
 
 
635 aa  87.4  5e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  34.59 
 
 
481 aa  87.4  5e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  87.4  5e-16  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  33.13 
 
 
196 aa  87  6e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  33.33 
 
 
249 aa  87  6e-16  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  87  6e-16  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  36.44 
 
 
265 aa  87  6e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  38.98 
 
 
206 aa  87  7e-16  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  35.59 
 
 
657 aa  86.3  9e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  38.02 
 
 
194 aa  85.9  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  33.96 
 
 
199 aa  85.9  0.000000000000001  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_011138  MADE_01100  sensory box/GGDEF family protein  35.66 
 
 
798 aa  85.9  0.000000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0739  putative response regulator  38.46 
 
 
261 aa  85.9  0.000000000000001  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  37.82 
 
 
196 aa  85.9  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  38.98 
 
 
229 aa  85.5  0.000000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_007413  Ava_3669  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  33.33 
 
 
432 aa  85.1  0.000000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  38.14 
 
 
207 aa  84.7  0.000000000000003  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  39.32 
 
 
215 aa  84.7  0.000000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_007796  Mhun_1200  response regulator receiver domain-containing protein  35.92 
 
 
248 aa  84.7  0.000000000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.0783054  normal  0.0763711 
 
 
-
 
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