More than 300 homologs were found in PanDaTox collection
for query gene BBta_4881 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  100 
 
 
281 aa  571  1.0000000000000001e-162  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  69.23 
 
 
240 aa  330  2e-89  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  60.61 
 
 
254 aa  290  3e-77  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  61.04 
 
 
254 aa  289  4e-77  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  60.61 
 
 
254 aa  288  5.0000000000000004e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_007778  RPB_1475  Crp/FNR family transcriptional regulator  51.67 
 
 
260 aa  231  8.000000000000001e-60  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.796858 
 
 
-
 
NC_009720  Xaut_2083  CRP/FNR family transcriptional regulator  48.91 
 
 
258 aa  216  4e-55  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.193038 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  47.93 
 
 
260 aa  216  5e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6158  cyclic nucleotide-binding protein  48.03 
 
 
251 aa  209  3e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6152  Crp/FNR family transcriptional regulator  45.02 
 
 
256 aa  209  6e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1486  Crp/FNR family transcriptional regulator  37.71 
 
 
240 aa  99.8  5e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  27.81 
 
 
229 aa  90.1  4e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  30.85 
 
 
235 aa  89.4  6e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.8 
 
 
247 aa  88.2  1e-16  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  27.96 
 
 
225 aa  87  3e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  28.86 
 
 
222 aa  86.3  5e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  27.75 
 
 
223 aa  85.1  0.000000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  26.04 
 
 
231 aa  84  0.000000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  24.87 
 
 
236 aa  83.6  0.000000000000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  29.35 
 
 
229 aa  83.2  0.000000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  30.35 
 
 
217 aa  82.8  0.000000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  23.96 
 
 
229 aa  82.8  0.000000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  27.32 
 
 
227 aa  83.2  0.000000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.73 
 
 
236 aa  82.8  0.000000000000006  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  24.77 
 
 
228 aa  82.4  0.000000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  24.74 
 
 
225 aa  82.4  0.000000000000008  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  27.18 
 
 
220 aa  80.9  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  28.42 
 
 
237 aa  81.3  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.17 
 
 
224 aa  80.5  0.00000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  25.5 
 
 
248 aa  79.3  0.00000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  27.32 
 
 
266 aa  79  0.00000000000008  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  29.51 
 
 
234 aa  79  0.00000000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.13 
 
 
239 aa  78.2  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  29.9 
 
 
232 aa  78.2  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  27.64 
 
 
225 aa  78.2  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  21.58 
 
 
227 aa  77.4  0.0000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  23.56 
 
 
236 aa  77.4  0.0000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  23.56 
 
 
236 aa  77.8  0.0000000000002  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  27.17 
 
 
224 aa  77.8  0.0000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  31.21 
 
 
251 aa  77.4  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  26.7 
 
 
223 aa  77.4  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.22 
 
 
225 aa  77.4  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.22 
 
 
225 aa  77.4  0.0000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  28.57 
 
 
227 aa  77.4  0.0000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_0269  Crp/FNR family transcriptional regulator  28.49 
 
 
238 aa  76.6  0.0000000000004  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  28.11 
 
 
232 aa  76.3  0.0000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  22.33 
 
 
225 aa  75.9  0.0000000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  28.16 
 
 
236 aa  75.9  0.0000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  28.65 
 
 
234 aa  75.9  0.0000000000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  28.31 
 
 
258 aa  75.5  0.000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  28.31 
 
 
258 aa  75.5  0.000000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  25.84 
 
 
352 aa  75.1  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  28.72 
 
 
267 aa  75.5  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  25.35 
 
 
236 aa  75.1  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.06 
 
 
228 aa  74.3  0.000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  23.96 
 
 
229 aa  73.9  0.000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_2075  Crp/FNR family transcriptional regulator  27.96 
 
 
210 aa  74.3  0.000000000002  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  26.92 
 
 
222 aa  74.7  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.81 
 
 
228 aa  74.7  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  25.58 
 
 
226 aa  73.9  0.000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  27.96 
 
 
260 aa  73.6  0.000000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  27.96 
 
 
260 aa  73.6  0.000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  26.92 
 
 
214 aa  73.9  0.000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  27.96 
 
 
260 aa  73.6  0.000000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  27.96 
 
 
242 aa  73.9  0.000000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  28.72 
 
 
218 aa  73.9  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  27.96 
 
 
260 aa  73.6  0.000000000003  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  27.96 
 
 
242 aa  73.9  0.000000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  24.47 
 
 
241 aa  73.6  0.000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  26.21 
 
 
223 aa  73.6  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  25.27 
 
 
223 aa  73.2  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  27.18 
 
 
237 aa  73.6  0.000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.4 
 
 
228 aa  73.2  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  26.22 
 
 
224 aa  73.2  0.000000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  25.81 
 
 
226 aa  72.8  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  27.23 
 
 
236 aa  73.2  0.000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  26.67 
 
 
221 aa  73.2  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  25.45 
 
 
254 aa  73.2  0.000000000005  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  24.21 
 
 
226 aa  72.8  0.000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  27.75 
 
 
219 aa  72.8  0.000000000007  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  27.86 
 
 
235 aa  72.4  0.000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  30.23 
 
 
221 aa  72.4  0.000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_008148  Rxyl_1332  Crp/FNR family transcriptional regulator  32.11 
 
 
238 aa  72.4  0.000000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.407818  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  26.2 
 
 
248 aa  72  0.000000000009  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  27.42 
 
 
224 aa  71.6  0.00000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  27.42 
 
 
260 aa  72  0.00000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  27.42 
 
 
224 aa  72  0.00000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  26.97 
 
 
226 aa  72  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.42 
 
 
224 aa  72  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  25.52 
 
 
248 aa  71.6  0.00000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.42 
 
 
224 aa  72  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.74 
 
 
242 aa  71.6  0.00000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  25.52 
 
 
248 aa  71.6  0.00000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  26.11 
 
 
238 aa  72  0.00000000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.42 
 
 
224 aa  72  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  30 
 
 
236 aa  71.2  0.00000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  27.42 
 
 
259 aa  71.2  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009767  Rcas_3679  Crp/FNR family transcriptional regulator  25.93 
 
 
216 aa  70.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.170413  normal  0.193267 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  25.56 
 
 
236 aa  70.9  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  27.42 
 
 
259 aa  71.2  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
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