280 homologs were found in PanDaTox collection
for query gene Svir_09620 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_09620  cell envelope-related function transcriptional attenuator common domain protein  100 
 
 
353 aa  687    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.369888 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  35.66 
 
 
567 aa  143  5e-33  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  35.06 
 
 
522 aa  139  8.999999999999999e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  36.7 
 
 
410 aa  131  1.0000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  36.96 
 
 
676 aa  127  3e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  33.72 
 
 
732 aa  125  8.000000000000001e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  34.8 
 
 
490 aa  124  3e-27  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  34.8 
 
 
490 aa  124  3e-27  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  33.58 
 
 
493 aa  124  3e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  34.8 
 
 
490 aa  124  3e-27  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  33.21 
 
 
493 aa  122  6e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  35.04 
 
 
497 aa  122  9e-27  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  35.84 
 
 
521 aa  120  3.9999999999999996e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  32.57 
 
 
538 aa  117  1.9999999999999998e-25  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  32.84 
 
 
517 aa  112  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  34.94 
 
 
514 aa  111  2.0000000000000002e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  32.69 
 
 
390 aa  94.7  2e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  29.17 
 
 
512 aa  95.1  2e-18  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  36.56 
 
 
296 aa  94  4e-18  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  28.08 
 
 
319 aa  93.6  4e-18  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  28.7 
 
 
521 aa  93.2  5e-18  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_013093  Amir_3559  cell envelope-related transcriptional attenuator  34.89 
 
 
352 aa  93.2  6e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.153801  n/a   
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  31.27 
 
 
573 aa  92.4  9e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  30.45 
 
 
487 aa  91.3  2e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  27.61 
 
 
496 aa  91.7  2e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  29.66 
 
 
497 aa  89.7  6e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  30.27 
 
 
414 aa  88.6  1e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  32.61 
 
 
545 aa  89  1e-16  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  30.36 
 
 
625 aa  89.4  1e-16  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  29.67 
 
 
504 aa  89  1e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  36.76 
 
 
363 aa  89  1e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  32.11 
 
 
443 aa  87  4e-16  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  30.89 
 
 
505 aa  87.4  4e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  30.77 
 
 
499 aa  87  5e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  27.89 
 
 
383 aa  86.3  7e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  33.96 
 
 
307 aa  85.5  0.000000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  31.88 
 
 
349 aa  84.7  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  27.86 
 
 
377 aa  84.3  0.000000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  28.24 
 
 
375 aa  83.6  0.000000000000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  27.38 
 
 
377 aa  84  0.000000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  30.59 
 
 
584 aa  84  0.000000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  28.24 
 
 
375 aa  83.6  0.000000000000005  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  28.24 
 
 
375 aa  83.6  0.000000000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  28.24 
 
 
375 aa  83.6  0.000000000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  28.24 
 
 
375 aa  83.6  0.000000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  28.57 
 
 
486 aa  83.2  0.000000000000006  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_014151  Cfla_2384  cell envelope-related transcriptional attenuator  33.04 
 
 
303 aa  82.8  0.000000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.174416  hitchhiker  0.00797054 
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  24.57 
 
 
408 aa  82.8  0.000000000000009  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  34.95 
 
 
434 aa  82.8  0.000000000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  26.81 
 
 
374 aa  82  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  27.31 
 
 
374 aa  82  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  31.67 
 
 
311 aa  82  0.00000000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  31.67 
 
 
311 aa  82  0.00000000000001  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  31.67 
 
 
311 aa  82.4  0.00000000000001  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  32.48 
 
 
328 aa  81.6  0.00000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
NC_014212  Mesil_1572  cell envelope-related transcriptional attenuator  30.51 
 
 
384 aa  81.6  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.0072424  normal  0.757675 
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  30.34 
 
 
453 aa  81.3  0.00000000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_008025  Dgeo_1232  cell envelope-related transcriptional attenuator  32.2 
 
 
377 aa  80.9  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.113674  normal 
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  30.48 
 
 
466 aa  80.9  0.00000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  29.08 
 
 
509 aa  80.5  0.00000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  28.68 
 
 
512 aa  80.5  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  27.12 
 
 
372 aa  80.5  0.00000000000004  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  35.68 
 
 
434 aa  80.1  0.00000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  29.59 
 
 
419 aa  79.3  0.00000000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  30.18 
 
 
453 aa  79  0.0000000000001  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_011729  PCC7424_2873  cell envelope-related transcriptional attenuator  28.18 
 
 
475 aa  78.2  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  29.72 
 
 
520 aa  78.2  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_009565  TBFG_13519  hypothetical protein  30.37 
 
 
512 aa  77  0.0000000000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.100718 
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  29.53 
 
 
358 aa  77  0.0000000000004  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  30 
 
 
468 aa  76.3  0.0000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7119  cell envelope-related transcriptional attenuator  26.76 
 
 
382 aa  76.3  0.0000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  28.63 
 
 
468 aa  75.5  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  31.14 
 
 
478 aa  75.5  0.000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  27.5 
 
 
563 aa  75.9  0.000000000001  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  35.06 
 
 
424 aa  74.7  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_009616  Tmel_1561  cell envelope-related transcriptional attenuator  26.69 
 
 
387 aa  75.1  0.000000000002  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1252  cell envelope-related transcriptional attenuator  25.79 
 
 
403 aa  74.7  0.000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000912522  n/a   
 
 
-
 
NC_011726  PCC8801_2524  cell envelope-related transcriptional attenuator  26.86 
 
 
492 aa  73.9  0.000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  26.51 
 
 
414 aa  73.9  0.000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  28.15 
 
 
495 aa  73.2  0.000000000006  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  29.02 
 
 
312 aa  73.2  0.000000000006  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  31.82 
 
 
393 aa  73.2  0.000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  28.38 
 
 
516 aa  73.2  0.000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  29.04 
 
 
516 aa  72.8  0.000000000008  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  26.86 
 
 
456 aa  72.8  0.000000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  26.94 
 
 
502 aa  72.8  0.000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  25.87 
 
 
560 aa  72.8  0.000000000008  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013161  Cyan8802_3582  cell envelope-related transcriptional attenuator  26.45 
 
 
492 aa  72.4  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  23.38 
 
 
405 aa  72.4  0.00000000001  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_013203  Apar_1295  cell envelope-related transcriptional attenuator  26.64 
 
 
407 aa  71.2  0.00000000002  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.865299 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  32.7 
 
 
336 aa  71.6  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  27.65 
 
 
480 aa  71.6  0.00000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_008530  LGAS_1715  transcriptional regulator  25.46 
 
 
374 aa  71.6  0.00000000002  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00565214 
 
 
-
 
NC_014158  Tpau_1296  cell envelope-related transcriptional attenuator  28.08 
 
 
414 aa  71.6  0.00000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  31.44 
 
 
481 aa  70.9  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  32.12 
 
 
307 aa  70.9  0.00000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_010320  Teth514_2233  cell envelope-related transcriptional attenuator  24.28 
 
 
303 aa  71.2  0.00000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  29.27 
 
 
320 aa  70.9  0.00000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1109  cell envelope-related transcriptional attenuator  26.48 
 
 
481 aa  70.1  0.00000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1138  cell envelope-related transcriptional attenuator  26.48 
 
 
481 aa  70.5  0.00000000005  Cyanothece sp. PCC 8802  Bacteria  normal  0.441684  normal 
 
 
-
 
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