| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0187 |
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| Symbol | |
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| ID | 8413035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 219727 |
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| End bp | 221418 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645021759 |
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| Product | cell envelope-related transcriptional attenuator |
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| Protein accession | YP_003179214 |
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| Protein GI | 257783997 |
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| COG category | [K] Transcription |
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| COG ID | [COG1316] Transcriptional regulator |
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| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.234515 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGAA GGTCACATTC ATCTCAGAAT CGCGGTCGCA ACAGCCGTGA TAGATACGAA
GATACCCCTG AGTACGATAC AGAGGACTTC GCACAGGACG ATTATGACGC ATATGATCAG
GGTGGCTATC AGCCTCGTAC GCTGGGCAGT GTTCGAAGTG CTGGTGCTAG CTCTGCTCGC
AATAATCACG CAGAATCTCA CGGATCCAGG TTTACTCGCG AGCCGTTGAT TGGCCAGACC
AATGTGGGTG ACGAGTGGCC AGAGGATAAC CCTGCTACGC AGCCAAGAAA CGCCCGCTAT
GCATCACATC GTGCTGGCGC CGTCAGCCAT GCTCCTTCAC GTGCTGAGGG CGTTGGTGCG
TATTCCAAGA AGCGCCAAGG ATCTTCTCGC GGTCGTGGCC TTAAGATTTT TGGGGGCATC
CTGGGAACGT TGCTACTGGT AGCAGGTATA GCGTTTGCCT GGTGGATGTT AGATACCAAC
TCAAAACTCC GTCAGGGTCT GGACGCAAAC TTGCAGGCTA CGCTGGTACA AGTTGCTCCA
TCTGATCCAT TCTACATGCT GCTTCTTGGC GTGGATAAGG ACGAGGGACG CGCAGAGAAC
TGGGGTGATT CCAACGCAAA CTTCCGCGCC GACACTATCA TTCTTGCCCG CGTAGACCCA
AAGAACAAGA AAATTACGTT GATTTCTATT CCACGAGACA CTATGGTTGA CCTGGGAGAA
CACGGAAAAC AGAAGATTAA CTCCGCGTAC AGCTACGGCG GTGCGTCCGG AATGGTCGAA
GCCGTTTCCA AACTGGCAAA CGTTAATATC TCGCACTATG CCGAGGTAGA CTTTGAGTCA
TTCACCAAAA TTGTGGACTC CATTGGCGGT ATTACGGTCA ACCTGCCCGT AGCTGTTTCC
GACATGCAAT ATTCTGGCAT CGATCTACCC GCGGGAGAGC AGCAGCTTAA CGGACAGCAA
GCACTTGGCC TTTCTCGCAG TCGCCACGCG TACGACAATT ACGGCGCCGG CGACTTCTAC
CGTGCGGCTA ACCAGCGCAT GATTTTAACG GCTATTGCCA AGAAAGTCCT AAAGCTGGAT
CCTGTTTCTA TGTCGGGAGC TGTTTCCACC ATGGCTGAAA GTGTAACCAC CGACTTTAAC
GTTACCGATA TCGTAGGCTT AGCTATGTCT TTAAGAGGCC TGGACACCTC CAAGGATATG
TATTCCGCAC GTACGCCGAC AACGTCTGAG CTTATCGATG ATGTCTGGTA TGAGATTGTT
GATAAGGACG CGTGGAAGAC CATGATGGAC CGCGTAAACC AGGCGCTGCC TCCTCTGGAA
GATGCAAGTA CCGATGAAAC CACAGGTATT GCTGGTACCG TTGCAGGTGA CGCTTCCGCA
ACCGACAACA TTAAGCCGGA CTACACCGGA GAAGTTGCCG TACTCAACGG TACCGATGTT
CAAGGACTTG CAGCTCAGAA GGCTGGCATC CTGAAGACAA AGGGTTACAC CGCCTACGCC
GACAGTTCGC AAGAGCATCC AAGCAACTCG ATTATTGTCT ACGACGGCAC ACGCACAGGC
CTGGCTAAGG CTGTTGGTGT TGCAAAGGCG CTAGACATCC CTACTGCAAA CATCAAGGCA
AACGACGGTA CCTACCCCAC TGACACGGAC ATTACCGTGG TCCTAGGCAC CGATCAGGCA
CCAAAGCGTT AA
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| Protein sequence | MARRSHSSQN RGRNSRDRYE DTPEYDTEDF AQDDYDAYDQ GGYQPRTLGS VRSAGASSAR
NNHAESHGSR FTREPLIGQT NVGDEWPEDN PATQPRNARY ASHRAGAVSH APSRAEGVGA
YSKKRQGSSR GRGLKIFGGI LGTLLLVAGI AFAWWMLDTN SKLRQGLDAN LQATLVQVAP
SDPFYMLLLG VDKDEGRAEN WGDSNANFRA DTIILARVDP KNKKITLISI PRDTMVDLGE
HGKQKINSAY SYGGASGMVE AVSKLANVNI SHYAEVDFES FTKIVDSIGG ITVNLPVAVS
DMQYSGIDLP AGEQQLNGQQ ALGLSRSRHA YDNYGAGDFY RAANQRMILT AIAKKVLKLD
PVSMSGAVST MAESVTTDFN VTDIVGLAMS LRGLDTSKDM YSARTPTTSE LIDDVWYEIV
DKDAWKTMMD RVNQALPPLE DASTDETTGI AGTVAGDASA TDNIKPDYTG EVAVLNGTDV
QGLAAQKAGI LKTKGYTAYA DSSQEHPSNS IIVYDGTRTG LAKAVGVAKA LDIPTANIKA
NDGTYPTDTD ITVVLGTDQA PKR
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