More than 300 homologs were found in PanDaTox collection
for query gene Apar_0187 on replicon NC_013203
Organism: Atopobium parvulum DSM 20469



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  100 
 
 
563 aa  1151    Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  44.47 
 
 
495 aa  338  1.9999999999999998e-91  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  44.17 
 
 
490 aa  307  4.0000000000000004e-82  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  46.67 
 
 
443 aa  305  2.0000000000000002e-81  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  36.83 
 
 
512 aa  293  5e-78  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  45.2 
 
 
516 aa  289  9e-77  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_013203  Apar_1295  cell envelope-related transcriptional attenuator  35.8 
 
 
407 aa  201  3e-50  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.865299 
 
 
-
 
NC_013204  Elen_3081  cell envelope-related transcriptional attenuator  35.99 
 
 
531 aa  194  4e-48  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2449  cell envelope-related transcriptional attenuator  32.69 
 
 
406 aa  150  4e-35  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00377769  normal 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  32.23 
 
 
375 aa  142  1.9999999999999998e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  32.23 
 
 
375 aa  142  1.9999999999999998e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  31.87 
 
 
375 aa  141  3e-32  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  31.8 
 
 
377 aa  141  3.9999999999999997e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  31.87 
 
 
375 aa  140  3.9999999999999997e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  31.87 
 
 
375 aa  140  3.9999999999999997e-32  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  29.38 
 
 
383 aa  140  6e-32  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  31.03 
 
 
377 aa  138  2e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  31.01 
 
 
337 aa  139  2e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  32.18 
 
 
374 aa  139  2e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  36.96 
 
 
455 aa  137  4e-31  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  30.63 
 
 
527 aa  137  6.0000000000000005e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  31.42 
 
 
372 aa  137  7.000000000000001e-31  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_003909  BCE_0673  LytR family transcription antiterminator  30.08 
 
 
337 aa  136  9.999999999999999e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  28.16 
 
 
317 aa  135  9.999999999999999e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  30.16 
 
 
338 aa  134  3e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  33.62 
 
 
374 aa  133  6.999999999999999e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0732  transcription antiterminator, LytR family  30.92 
 
 
338 aa  133  9e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1830  LytR family transcription antiterminator  29.62 
 
 
333 aa  132  1.0000000000000001e-29  Bacillus anthracis str. Sterne  Bacteria  normal  0.241912  n/a   
 
 
-
 
NC_005957  BT9727_1804  LytR family transcriptional regulator  29.62 
 
 
333 aa  132  1.0000000000000001e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00220424  n/a   
 
 
-
 
NC_007530  GBAA_0605  LytR family transcription antiterminator  31.33 
 
 
333 aa  132  1.0000000000000001e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1973  LytR family transcription antiterminator  29.62 
 
 
333 aa  132  1.0000000000000001e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2008  transcription antiterminator, LytR family  29.62 
 
 
333 aa  132  1.0000000000000001e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.0610299999999994e-43 
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  31.33 
 
 
337 aa  132  2.0000000000000002e-29  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1787  LytR family transcriptional regulator  29.62 
 
 
335 aa  132  2.0000000000000002e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0643  transcription antiterminator, LytR family  29.84 
 
 
338 aa  132  2.0000000000000002e-29  Bacillus cereus B4264  Bacteria  normal  0.849345  n/a   
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  28.83 
 
 
520 aa  132  2.0000000000000002e-29  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  31.33 
 
 
338 aa  132  2.0000000000000002e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
NC_011772  BCG9842_B4695  transcription antiterminator, LytR family  28.95 
 
 
338 aa  132  2.0000000000000002e-29  Bacillus cereus G9842  Bacteria  normal  0.541641  hitchhiker  0.0000000308245 
 
 
-
 
NC_005957  BT9727_0516  LytR family transcriptional regulator  30.92 
 
 
337 aa  130  5.0000000000000004e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0516  LytR family transcriptional regulator  30.92 
 
 
337 aa  130  5.0000000000000004e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2056  LytR family transcription antiterminator  29.3 
 
 
333 aa  130  7.000000000000001e-29  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00905786  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  35.45 
 
 
307 aa  129  1.0000000000000001e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_011772  BCG9842_B3352  transcription antiterminator, LytR family  30.71 
 
 
335 aa  129  1.0000000000000001e-28  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000199263  hitchhiker  0.0000000000000086496 
 
 
-
 
NC_010184  BcerKBAB4_1838  cell envelope-related transcriptional attenuator  29.3 
 
 
333 aa  129  1.0000000000000001e-28  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00343174  n/a   
 
 
-
 
NC_002976  SERP1893  transcriptional regulator, putative  33.08 
 
 
316 aa  129  2.0000000000000002e-28  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  32.18 
 
 
509 aa  129  2.0000000000000002e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1700  cell envelope-related transcriptional attenuator  26.67 
 
 
463 aa  129  2.0000000000000002e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.55383  normal 
 
 
-
 
NC_011658  BCAH187_A2078  transcription antiterminator, LytR family  28.98 
 
 
333 aa  129  2.0000000000000002e-28  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000000542577  n/a   
 
 
-
 
NC_011725  BCB4264_A1975  transcription antiterminator, LytR family  29.3 
 
 
333 aa  127  4.0000000000000003e-28  Bacillus cereus B4264  Bacteria  normal  0.258453  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  31.39 
 
 
319 aa  126  1e-27  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_009487  SaurJH9_2334  cell envelope-related transcriptional attenuator  34.87 
 
 
318 aa  125  2e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.591324  n/a   
 
 
-
 
NC_009632  SaurJH1_2377  transcription attenuator LytR  34.87 
 
 
318 aa  125  2e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  29.88 
 
 
481 aa  124  4e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  25.88 
 
 
505 aa  124  5e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  32.17 
 
 
405 aa  124  6e-27  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  29.57 
 
 
468 aa  122  9.999999999999999e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1106  cell envelope-related transcriptional attenuator  31.42 
 
 
497 aa  122  9.999999999999999e-27  Eggerthella lenta DSM 2243  Bacteria  normal  0.0413788  hitchhiker  0.0000000000000467776 
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  30.5 
 
 
335 aa  123  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  28.66 
 
 
408 aa  122  1.9999999999999998e-26  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  36.32 
 
 
380 aa  121  3e-26  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  32.61 
 
 
308 aa  121  3e-26  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  37.22 
 
 
336 aa  120  3.9999999999999996e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013739  Cwoe_5265  cell envelope-related transcriptional attenuator  40.45 
 
 
414 aa  121  3.9999999999999996e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.534178 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  29.18 
 
 
497 aa  121  3.9999999999999996e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  28.74 
 
 
528 aa  121  3.9999999999999996e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  35.4 
 
 
409 aa  120  6e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_009674  Bcer98_1499  cell envelope-related transcriptional attenuator  29.96 
 
 
329 aa  120  7e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.000000186761  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  27.75 
 
 
504 aa  120  7.999999999999999e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_008261  CPF_0280  putative transcriptional regulator  32.55 
 
 
340 aa  120  7.999999999999999e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  28.36 
 
 
478 aa  120  9e-26  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0875  LytR family transcription antiterminator  30.49 
 
 
400 aa  119  9.999999999999999e-26  Bacillus cereus ATCC 10987  Bacteria  normal  0.0676567  n/a   
 
 
-
 
NC_013161  Cyan8802_1138  cell envelope-related transcriptional attenuator  36.28 
 
 
481 aa  119  9.999999999999999e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.441684  normal 
 
 
-
 
NC_011726  PCC8801_1109  cell envelope-related transcriptional attenuator  36.28 
 
 
481 aa  119  9.999999999999999e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0271  cell envelope-related function transcriptional attenuator  31.56 
 
 
340 aa  119  9.999999999999999e-26  Clostridium perfringens SM101  Bacteria  normal  0.968761  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0694  cell envelope-related transcriptional attenuator  30.49 
 
 
401 aa  119  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.12922  n/a   
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  34.93 
 
 
310 aa  119  9.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_009767  Rcas_0287  cell envelope-related transcriptional attenuator  26.16 
 
 
412 aa  119  1.9999999999999998e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  29.8 
 
 
426 aa  119  1.9999999999999998e-25  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_010718  Nther_2377  cell envelope-related transcriptional attenuator  30.28 
 
 
344 aa  118  3e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00145979  normal 
 
 
-
 
NC_008527  LACR_0489  transcription regulator  28.61 
 
 
450 aa  118  3e-25  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0946  transcription antiterminator, LytR family  30.08 
 
 
400 aa  118  3e-25  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000012569  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  34.36 
 
 
390 aa  117  3.9999999999999997e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1208  cell envelope-related transcriptional attenuator  30.96 
 
 
330 aa  117  3.9999999999999997e-25  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000721845  n/a   
 
 
-
 
NC_008312  Tery_2604  cell envelope-related transcriptional attenuator  36.61 
 
 
471 aa  117  5e-25  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.22991 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  35.22 
 
 
411 aa  117  6e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  34.24 
 
 
395 aa  117  7.999999999999999e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  30.17 
 
 
313 aa  117  7.999999999999999e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0598  cell envelope-related function transcriptional attenuator  30.67 
 
 
337 aa  117  7.999999999999999e-25  Clostridium perfringens SM101  Bacteria  normal  0.195928  n/a   
 
 
-
 
NC_006274  BCZK0680  LytR family transcriptional regulator  30.08 
 
 
398 aa  116  8.999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  32.53 
 
 
419 aa  116  8.999999999999998e-25  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_011884  Cyan7425_3856  cell envelope-related transcriptional attenuator  28.02 
 
 
451 aa  116  1.0000000000000001e-24  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0838  transcription antiterminator, LytR family  29.67 
 
 
399 aa  115  2.0000000000000002e-24  Bacillus cereus B4264  Bacteria  hitchhiker  0.00382216  n/a   
 
 
-
 
NC_008530  LGAS_1715  transcriptional regulator  29.7 
 
 
374 aa  115  2.0000000000000002e-24  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00565214 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  36.49 
 
 
306 aa  115  2.0000000000000002e-24  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_009674  Bcer98_0648  cell envelope-related transcriptional attenuator  30.08 
 
 
388 aa  115  2.0000000000000002e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.500203  n/a   
 
 
-
 
NC_005945  BAS0746  LytR family transcription antiterminator  29.67 
 
 
398 aa  114  3e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  36.04 
 
 
407 aa  114  3e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_007530  GBAA_0783  LytR family transcription antiterminator  29.67 
 
 
398 aa  114  3e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  33.33 
 
 
349 aa  115  3e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2873  cell envelope-related transcriptional attenuator  33.33 
 
 
475 aa  114  3e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
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