| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_3000 |
|---|
| Symbol | |
|---|
| ID | 8417333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | - |
|---|
| Start bp | 3482701 |
|---|
| End bp | 3484188 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645025978 |
|---|
| Product | cell envelope-related transcriptional attenuator |
|---|
| Protein accession | YP_003183332 |
|---|
| Protein GI | 257792726 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1316] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACA AACGCAGCCC TCAACGGCGC CCTGCGAGCA CCGAGCGTTT TTCCCGCTCC
TCGTACGGCC GCTCCCGTCA GACTGAACCG GGTCGTCGCC CCAGCGTTCA AGGCGAATCC
GCTCCCACGC CGCGCCGCGT GTCGCGAGCC GATTACGAGC GCACGCGCGC ACGCTCTCGT
CGCCGCACGC TGGTTATCGC GCTTGCCGTT GTGGGCGTGC TGGTGCTGGG CGGGGCGGGG
GCTGCGTTCG CGTACTACAA CGTACTCTCG GGAAACCTTC ACGACGGCGT CAGCGCCGAG
CTGCGCAATG CGCTCGTGGA AACCGATTTG GCGAACGAGC CGTTCTATAT CCTGCTCATG
GGAACCGACG GGTCGAACGA CCGCGAAGCG TCGGCGGAAT TCGCCGGCGA TCAGTTCCGC
AGCGACAGCA TCATCCTCGC GCGCATCGAC CCGGTGGACA AGAAGGCGAC GCTCGTCTCC
ATCCACCGCG ATACCCTGGT AGACATGGGG GAATACGGGC AGAACAAGCT GAACGCTGCA
CATGCCATCG GCGGAGCCGC TCTCACGGTG AAAACCGTAT CGAAGTTGGC GGGTGTGCCC
ATTTCCCATT ATGCCGAGAT CAACTTCGAC GGCTTCAAAG ACATTGTCGA TGCGCTGGGC
GGCGTCGAAG TGGATGTTCC GATGGAGATC GACGACGAGG ATGCCGGCGG CCATCTGGAT
GCCGGGCTGC AGACGCTGAG CGGCGATCAG GCGCTCATCC TGTGTCGTTC GCGCCATGCC
TACGACGAGT ACGGCGACGG CGACTCCTAC CGTGCAGCGA ACCAGCGTCT CGTCCTGTCC
GCCATCGCGA AGAAAATCCT GTCGGCCGAC GTGGCCACGA TGGCATCCAC CGTCCAGGCG
CTTTCCCAAT ACGTGACTAC GGATCTCGAG ATTTCCGACA TCATCGGCCT CGCGCAGACG
ATGCAGGGCC TCGACCCGGC CACCGACATC TATTCGGCCA TGGAGCCGAC TACGTCCAAG
TACATCAACG ACGTCTGGTA CGAAATCAAC AACGTCGACG AATGGAAGAA AATGATGACT
CGCGTTAACC AGGGCCTTCC GCCCACCGAC GAGGACATCG TCGACGAGAT GTCGAACACC
GTGCTGGCAA CCACCGGCAG CGGCCAGACG CATTCCAGCA CGAACGAGGA CGGCACGCAG
AAAAAAGCGA AGCGCACGGG CAGCGTGGCG GTGCGCAACG GCAACGGCAT CACCGGCGCA
GGCACCGAGG CGTCCGAGCG CATCGAGGAA CTGGGCTATT CGGTGGAGTC GGGCAATGCC
GACAGCTTCG ACTACCCTAA GACGCTGGTG ATTTACGACG ATGAGGCGAA GGCATCGCGC
GCGCAGGAGA TCGCGGATGC TCTTGGCGTT GGAAAAGCCA TGAAAAACGA CGGATCGTAT
CTGTTCGAGA GCGATTTCCT CGTGGTGTTG GGAAGCGACT GGAAGTAG
|
|---|
| Protein sequence | MDNKRSPQRR PASTERFSRS SYGRSRQTEP GRRPSVQGES APTPRRVSRA DYERTRARSR
RRTLVIALAV VGVLVLGGAG AAFAYYNVLS GNLHDGVSAE LRNALVETDL ANEPFYILLM
GTDGSNDREA SAEFAGDQFR SDSIILARID PVDKKATLVS IHRDTLVDMG EYGQNKLNAA
HAIGGAALTV KTVSKLAGVP ISHYAEINFD GFKDIVDALG GVEVDVPMEI DDEDAGGHLD
AGLQTLSGDQ ALILCRSRHA YDEYGDGDSY RAANQRLVLS AIAKKILSAD VATMASTVQA
LSQYVTTDLE ISDIIGLAQT MQGLDPATDI YSAMEPTTSK YINDVWYEIN NVDEWKKMMT
RVNQGLPPTD EDIVDEMSNT VLATTGSGQT HSSTNEDGTQ KKAKRTGSVA VRNGNGITGA
GTEASERIEE LGYSVESGNA DSFDYPKTLV IYDDEAKASR AQEIADALGV GKAMKNDGSY
LFESDFLVVL GSDWK
|
|---|
| |