| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1996 |
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| Symbol | |
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| ID | 5539474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2562894 |
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| End bp | 2564477 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894131 |
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| Product | cell envelope-related transcriptional attenuator |
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| Protein accession | YP_001432102 |
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| Protein GI | 156741973 |
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| COG category | [K] Transcription |
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| COG ID | [COG1316] Transcriptional regulator |
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| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.177975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGGACG ATCATCAACG ACGTTCTATC CGTGGCACAA CGACGCGTGA GCGCATTGCA
GCACGACGGC GGGCGCGTCG CGCCAGCCAA TGGTCTGGGT TCGCGCTGGC ACTCGTGGCG
CTTGCCGTGC TCGCGTTGTT GACCATCGGA GTGACGGCGC TGCGACGCGC CGAACGAACT
CTGGCAGAAC TCGAACAGAA TGATCCACGT CAGCGCGCGA CTGCCACCTC ACCATCCCCG
ACCACGGCGC CACAAACTCC GGCTTCCAGC ACGGTAGCAT CGCCGGCGCC TGCGGAATAC
GGGTCAGCGA ACGACTTGCT TGCCCGACCA TTTACGGTGC TGCTCCTCGG CGTCGACCGC
CGCACCGACC CCGACGAAGG GGTGCGCAGT GATACCCTGA TGCTCGTGCG TGTCGATCCA
CAGGCGCGCA CCATCAGTAT GCTCTCAATC CCACGTGACT CGGTCGTGCC TGTCCCACGC
CTTGGTTGGG CGAAGATCAA CGCGGCATAT GGGTATGGGT ACGCCAACGC TGCAACGCTC
TATGGCAACA GCGTCGAACC ATCGGCTGCT GGCGGCGCAC TCGCAGCCGA AGCGGTCGAA
CAGTTTCTCG GTGTTACCAT CGATTATATT GCGCAGGTCG ATTTTCGTGG TTTCGAGCGC
CTGGTCGATT CGGTCGGCGG CGTCTTGATC GATGTGCCCG CCCCTGTTCT CGATGCAGAG
TATCCGACCG AAAACTACGG CGTCGAGCGG ATCTACATCC CGGCAGGACT GCAAGTGTTC
GATGGACGCA CAGCGTTAAT CTACGCTCGC ACGCGCCACG GCAGCAGTGA TTTCGAGCGC
AGTAAACGTC AGCAGCAGGT GTTGCGCGCG CTTTTCGATC AGGTGCGCAA CCGCGGGCTG
CTGGCGAATA CGACCCTCCT GCCACGCTGG ATTGAGGTGC TCACCCAACA CGTGCGCACG
ACATTACCGG TGTCCGACCT TCGGGCAATG GCAGAACTTG CAGCGCTGGC GCGCGACCTG
GACAGCAGTC GCATTCTGCA ACTGTCGATC AACCCAAATG ATGTGGCCAT CGACCGTGAA
GACGGCTCAG ACATTTACTG GAATCCGAAC GATATTGCGG CGCTGGTGGC GCGCTGGGAA
GCCGGTCCCG ACCTGACCGC CACGCCGCCG ATTGCGGGTC TGCCGACCCA GGTTGCTGTA
CCCGACGCAT CGCCGGATGA TCCGTTGCAC GGCTCGGTGC CAACGCTTCT CCCATCAGTC
GTCGAGCCGG GCGCCGTTGT TCAGGTGCTC AATGGCGCGC GCGTCGAGGG GATTGCCGGG
CGCGTCAGCG CATTTCTGGA AAAGCGCGGA TTCGTCGTCG CCGACCCGGA AACAGTCACC
CGCGTCTACG AGCATACCCT GATTATCGAC TATACCGGAC GCCCCGAAAC ACGTCGTCTT
CTGGCAGAGG CGCTCGGTGT CAATGCTCGC TATGTCCTGG CGCCCGCCCC GCCTGATGCG
CCGCCGCCGG GGTATAATGT CGATATTGTC GTCATTGTCG GGCGCGATTA TCGGCAGGAA
TGGCTGAACG ACGGCGGGAG GTGA
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| Protein sequence | MADDHQRRSI RGTTTRERIA ARRRARRASQ WSGFALALVA LAVLALLTIG VTALRRAERT
LAELEQNDPR QRATATSPSP TTAPQTPASS TVASPAPAEY GSANDLLARP FTVLLLGVDR
RTDPDEGVRS DTLMLVRVDP QARTISMLSI PRDSVVPVPR LGWAKINAAY GYGYANAATL
YGNSVEPSAA GGALAAEAVE QFLGVTIDYI AQVDFRGFER LVDSVGGVLI DVPAPVLDAE
YPTENYGVER IYIPAGLQVF DGRTALIYAR TRHGSSDFER SKRQQQVLRA LFDQVRNRGL
LANTTLLPRW IEVLTQHVRT TLPVSDLRAM AELAALARDL DSSRILQLSI NPNDVAIDRE
DGSDIYWNPN DIAALVARWE AGPDLTATPP IAGLPTQVAV PDASPDDPLH GSVPTLLPSV
VEPGAVVQVL NGARVEGIAG RVSAFLEKRG FVVADPETVT RVYEHTLIID YTGRPETRRL
LAEALGVNAR YVLAPAPPDA PPPGYNVDIV VIVGRDYRQE WLNDGGR
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