More than 300 homologs were found in PanDaTox collection
for query gene RoseRS_1714 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  77.88 
 
 
527 aa  719    Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  100 
 
 
528 aa  1035    Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_011831  Cagg_1700  cell envelope-related transcriptional attenuator  51.79 
 
 
463 aa  355  1e-96  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.55383  normal 
 
 
-
 
NC_009767  Rcas_0287  cell envelope-related transcriptional attenuator  42.26 
 
 
412 aa  265  1e-69  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  37.62 
 
 
585 aa  261  2e-68  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3186  cell envelope-related transcriptional attenuator  40.29 
 
 
451 aa  252  1e-65  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.689692 
 
 
-
 
NC_009523  RoseRS_0249  cell envelope-related transcriptional attenuator  42.38 
 
 
461 aa  247  3e-64  Roseiflexus sp. RS-1  Bacteria  normal  0.176246  normal  0.0400211 
 
 
-
 
NC_009523  RoseRS_4519  cell envelope-related transcriptional attenuator  39.92 
 
 
505 aa  167  2.9999999999999998e-40  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  36.03 
 
 
455 aa  166  9e-40  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  38.49 
 
 
503 aa  165  2.0000000000000002e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  36.84 
 
 
356 aa  157  6e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_011831  Cagg_3226  cell envelope-related transcriptional attenuator  38.69 
 
 
370 aa  156  1e-36  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.501586 
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  38.62 
 
 
353 aa  155  2e-36  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  41.05 
 
 
377 aa  155  2e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  29.82 
 
 
563 aa  141  1.9999999999999998e-32  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  32.39 
 
 
490 aa  141  3e-32  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_009972  Haur_4851  cell envelope-related transcriptional attenuator  38.01 
 
 
432 aa  139  1e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  35.52 
 
 
445 aa  130  5.0000000000000004e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  31.55 
 
 
319 aa  129  2.0000000000000002e-28  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  30.51 
 
 
383 aa  127  6e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  30.85 
 
 
505 aa  126  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  28.51 
 
 
504 aa  124  3e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  32.19 
 
 
509 aa  123  9.999999999999999e-27  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  25.8 
 
 
495 aa  121  3e-26  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  34.58 
 
 
443 aa  119  9e-26  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  34.56 
 
 
436 aa  119  9.999999999999999e-26  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  37.19 
 
 
411 aa  119  9.999999999999999e-26  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  31.56 
 
 
322 aa  118  1.9999999999999998e-25  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  42.2 
 
 
328 aa  118  1.9999999999999998e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
NC_011658  BCAH187_A0946  transcription antiterminator, LytR family  26.7 
 
 
400 aa  118  1.9999999999999998e-25  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000012569  n/a   
 
 
-
 
NC_011725  BCB4264_A0838  transcription antiterminator, LytR family  26.99 
 
 
399 aa  118  3e-25  Bacillus cereus B4264  Bacteria  hitchhiker  0.00382216  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  31.58 
 
 
374 aa  118  3e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0640  transcriptional regulator, putative  30.51 
 
 
412 aa  117  3.9999999999999997e-25  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.00230389  n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  32.46 
 
 
377 aa  117  5e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  33.47 
 
 
335 aa  117  5e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS0746  LytR family transcription antiterminator  29.5 
 
 
398 aa  117  5e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0694  LytR family transcriptional regulator  29.5 
 
 
398 aa  117  5e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0354301  n/a   
 
 
-
 
NC_007530  GBAA_0783  LytR family transcription antiterminator  29.5 
 
 
398 aa  117  5e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4498  transcription antiterminator, LytR family  27.56 
 
 
399 aa  117  6e-25  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000000000182536 
 
 
-
 
NC_011773  BCAH820_0878  transcription antiterminator, LytR family  29.5 
 
 
398 aa  117  6e-25  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.78734e-21 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  32.46 
 
 
377 aa  117  6e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1138  transcription attenuator LytR  31.47 
 
 
405 aa  117  6.9999999999999995e-25  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.195072  n/a   
 
 
-
 
NC_009487  SaurJH9_1115  hypothetical protein  31.47 
 
 
405 aa  117  6.9999999999999995e-25  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.108667  n/a   
 
 
-
 
NC_013739  Cwoe_0921  cell envelope-related transcriptional attenuator  31.82 
 
 
515 aa  116  7.999999999999999e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.455476  normal 
 
 
-
 
NC_005957  BT9727_3347  transcriptional regulator LytR, attenuator for lytABC and lytR expression  28.57 
 
 
345 aa  116  8.999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000255205  n/a   
 
 
-
 
NC_006274  BCZK0680  LytR family transcriptional regulator  29.5 
 
 
398 aa  116  8.999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  28.93 
 
 
453 aa  116  1.0000000000000001e-24  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  32.02 
 
 
375 aa  115  3e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  32.02 
 
 
375 aa  115  3e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  32.02 
 
 
375 aa  115  3e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  32.02 
 
 
375 aa  115  3e-24  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  32.02 
 
 
375 aa  115  3e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3273  cell envelope-related transcriptional attenuator  30 
 
 
345 aa  115  3e-24  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00000492202  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0694  cell envelope-related transcriptional attenuator  34.17 
 
 
401 aa  114  4.0000000000000004e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.12922  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  32.02 
 
 
372 aa  114  4.0000000000000004e-24  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  32.38 
 
 
418 aa  114  4.0000000000000004e-24  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  32.02 
 
 
374 aa  114  4.0000000000000004e-24  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3295  transcriptional regulator LytR, attenuator for lytABC and lytR expression  32.46 
 
 
345 aa  113  7.000000000000001e-24  Bacillus cereus E33L  Bacteria  normal  0.189328  n/a   
 
 
-
 
NC_003909  BCE_0875  LytR family transcription antiterminator  29.14 
 
 
400 aa  113  1.0000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  normal  0.0676567  n/a   
 
 
-
 
NC_013161  Cyan8802_3582  cell envelope-related transcriptional attenuator  33.46 
 
 
492 aa  112  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  30.84 
 
 
380 aa  112  2.0000000000000002e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_011773  BCAH820_3598  transcription antiterminator, LytR family  30.66 
 
 
345 aa  111  3e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000000156827 
 
 
-
 
NC_005945  BAS3381  LytR family transcription antiterminator  31.58 
 
 
345 aa  111  4.0000000000000004e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.288134  n/a   
 
 
-
 
NC_007530  GBAA_3647  LytR family transcription antiterminator  31.58 
 
 
345 aa  111  4.0000000000000004e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0513784  n/a   
 
 
-
 
NC_013739  Cwoe_4615  cell envelope-related transcriptional attenuator  34.51 
 
 
510 aa  111  4.0000000000000004e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  27.44 
 
 
512 aa  110  5e-23  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_011772  BCG9842_B1619  transcription antiterminator, LytR family  27.97 
 
 
345 aa  110  5e-23  Bacillus cereus G9842  Bacteria  hitchhiker  0.00116574  hitchhiker  0.0000348163 
 
 
-
 
NC_011726  PCC8801_2524  cell envelope-related transcriptional attenuator  33.09 
 
 
492 aa  110  5e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_0648  cell envelope-related transcriptional attenuator  33.33 
 
 
388 aa  110  6e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.500203  n/a   
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  31.08 
 
 
379 aa  110  6e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3698  transcription antiterminator, LytR family  28.3 
 
 
345 aa  110  7.000000000000001e-23  Bacillus cereus B4264  Bacteria  hitchhiker  0.00180581  n/a   
 
 
-
 
NC_011658  BCAH187_A3613  transcription antiterminator, LytR family  29.55 
 
 
345 aa  110  9.000000000000001e-23  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000276906  n/a   
 
 
-
 
NC_003909  BCE_3605  LytR family transcription antiterminator  29.17 
 
 
345 aa  109  1e-22  Bacillus cereus ATCC 10987  Bacteria  normal  0.0149783  n/a   
 
 
-
 
NC_005957  BT9727_0516  LytR family transcriptional regulator  29 
 
 
337 aa  108  3e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2604  cell envelope-related transcriptional attenuator  31.27 
 
 
471 aa  108  3e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.22991 
 
 
-
 
NC_011658  BCAH187_A0732  transcription antiterminator, LytR family  29.87 
 
 
338 aa  108  3e-22  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  29 
 
 
338 aa  107  4e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  29 
 
 
337 aa  107  4e-22  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0605  LytR family transcription antiterminator  29 
 
 
333 aa  108  4e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  33.47 
 
 
426 aa  107  4e-22  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  31 
 
 
405 aa  107  5e-22  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  28.28 
 
 
522 aa  107  5e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  28.69 
 
 
567 aa  107  5e-22  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  29.96 
 
 
389 aa  107  6e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_006274  BCZK0516  LytR family transcriptional regulator  29.2 
 
 
337 aa  107  6e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  29.44 
 
 
338 aa  107  6e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  34.41 
 
 
456 aa  107  6e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_011725  BCB4264_A0643  transcription antiterminator, LytR family  30.09 
 
 
338 aa  107  7e-22  Bacillus cereus B4264  Bacteria  normal  0.849345  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  31.3 
 
 
419 aa  107  7e-22  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_011772  BCG9842_B4695  transcription antiterminator, LytR family  30.09 
 
 
338 aa  106  8e-22  Bacillus cereus G9842  Bacteria  normal  0.541641  hitchhiker  0.0000000308245 
 
 
-
 
NC_003909  BCE_0673  LytR family transcription antiterminator  29.44 
 
 
337 aa  106  9e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  26.48 
 
 
478 aa  106  1e-21  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  29.18 
 
 
337 aa  106  1e-21  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1208  cell envelope-related transcriptional attenuator  27.59 
 
 
330 aa  106  1e-21  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000721845  n/a   
 
 
-
 
NC_011726  PCC8801_1109  cell envelope-related transcriptional attenuator  26.59 
 
 
481 aa  105  2e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1138  cell envelope-related transcriptional attenuator  26.59 
 
 
481 aa  105  2e-21  Cyanothece sp. PCC 8802  Bacteria  normal  0.441684  normal 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  27.15 
 
 
521 aa  105  2e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  31.37 
 
 
502 aa  105  2e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  30.5 
 
 
516 aa  105  3e-21  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  30.98 
 
 
506 aa  105  3e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>