More than 300 homologs were found in PanDaTox collection
for query gene Amir_3559 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_3559  cell envelope-related transcriptional attenuator  100 
 
 
352 aa  674    Actinosynnema mirum DSM 43827  Bacteria  normal  0.153801  n/a   
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  39.29 
 
 
410 aa  158  2e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  35.74 
 
 
567 aa  152  8e-36  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  35.86 
 
 
732 aa  149  8e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  36.86 
 
 
522 aa  148  1.0000000000000001e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_014158  Tpau_1296  cell envelope-related transcriptional attenuator  34.88 
 
 
414 aa  139  4.999999999999999e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  35.77 
 
 
490 aa  137  2e-31  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  35.77 
 
 
490 aa  137  2e-31  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  35.77 
 
 
490 aa  137  2e-31  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  33.85 
 
 
493 aa  132  6.999999999999999e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  34.78 
 
 
538 aa  132  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_009565  TBFG_13519  hypothetical protein  33.88 
 
 
512 aa  131  2.0000000000000002e-29  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.100718 
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  32.69 
 
 
493 aa  128  2.0000000000000002e-28  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  32.41 
 
 
517 aa  126  5e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  34.22 
 
 
496 aa  126  5e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  35.77 
 
 
676 aa  124  2e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  32.71 
 
 
468 aa  122  7e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  31.93 
 
 
486 aa  122  9.999999999999999e-27  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013159  Svir_09620  cell envelope-related function transcriptional attenuator common domain protein  36.44 
 
 
353 aa  121  1.9999999999999998e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.369888 
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  33.07 
 
 
497 aa  120  4.9999999999999996e-26  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  31.77 
 
 
487 aa  117  1.9999999999999998e-25  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_013131  Caci_8771  cell envelope-related transcriptional attenuator  35.41 
 
 
547 aa  117  3.9999999999999997e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.359858 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  36.82 
 
 
521 aa  117  3.9999999999999997e-25  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  32.78 
 
 
560 aa  115  8.999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013131  Caci_7119  cell envelope-related transcriptional attenuator  32.99 
 
 
382 aa  115  1.0000000000000001e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  29.71 
 
 
521 aa  115  1.0000000000000001e-24  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  33.11 
 
 
491 aa  115  1.0000000000000001e-24  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  31.99 
 
 
514 aa  115  1.0000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  32.97 
 
 
481 aa  110  5e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  37.67 
 
 
499 aa  110  5e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  36.36 
 
 
307 aa  107  2e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  30.27 
 
 
643 aa  108  2e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  33.48 
 
 
481 aa  107  2e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  32.55 
 
 
625 aa  106  6e-22  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  34.2 
 
 
393 aa  105  9e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  30.87 
 
 
512 aa  104  2e-21  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  29.33 
 
 
573 aa  104  2e-21  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  29.46 
 
 
400 aa  105  2e-21  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  34.92 
 
 
497 aa  103  5e-21  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1299  cell envelope-related transcriptional attenuator  35.24 
 
 
340 aa  102  8e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  29.49 
 
 
530 aa  102  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  30.65 
 
 
506 aa  101  2e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  35.33 
 
 
320 aa  100  3e-20  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  32.62 
 
 
453 aa  99  1e-19  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  33.33 
 
 
409 aa  98.6  1e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013131  Caci_1912  cell envelope-related transcriptional attenuator  29.9 
 
 
664 aa  98.2  2e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  31.43 
 
 
480 aa  97.8  2e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  32.55 
 
 
465 aa  97.4  3e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  34.68 
 
 
379 aa  97.4  3e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  37.32 
 
 
336 aa  97.1  4e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  33.33 
 
 
509 aa  96.3  8e-19  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  31.42 
 
 
468 aa  95.9  1e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  30.77 
 
 
545 aa  95.5  1e-18  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  33.21 
 
 
311 aa  95.5  1e-18  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  33.21 
 
 
311 aa  95.5  1e-18  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  31.76 
 
 
526 aa  95.1  2e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  32.52 
 
 
434 aa  95.1  2e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  30.61 
 
 
516 aa  94.4  3e-18  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  31.32 
 
 
406 aa  94  4e-18  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  32.82 
 
 
311 aa  94  4e-18  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  31.07 
 
 
584 aa  93.6  4e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  27.48 
 
 
520 aa  92.8  9e-18  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  36.81 
 
 
306 aa  92.4  1e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  27.35 
 
 
478 aa  90.9  3e-17  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  28.94 
 
 
618 aa  90.9  3e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  31.36 
 
 
466 aa  90.1  4e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  30.23 
 
 
420 aa  90.1  6e-17  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  30.77 
 
 
390 aa  89.7  7e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  30.22 
 
 
520 aa  89.4  1e-16  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  32.66 
 
 
463 aa  88.6  1e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  28.7 
 
 
417 aa  89  1e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  30.94 
 
 
549 aa  88.6  2e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  28.63 
 
 
504 aa  86.7  5e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  28.46 
 
 
563 aa  86.7  5e-16  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  29.27 
 
 
540 aa  86.3  8e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  29.92 
 
 
414 aa  85.1  0.000000000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  29.57 
 
 
395 aa  85.1  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  34.81 
 
 
326 aa  84.3  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  28.97 
 
 
307 aa  84.3  0.000000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  29.13 
 
 
434 aa  84  0.000000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  28.49 
 
 
404 aa  83.6  0.000000000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  29.91 
 
 
407 aa  83.2  0.000000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  28.64 
 
 
405 aa  82.8  0.000000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  30.36 
 
 
527 aa  82.4  0.00000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  29.92 
 
 
395 aa  81.6  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  29.39 
 
 
436 aa  82  0.00000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  31.69 
 
 
363 aa  81.6  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  28.99 
 
 
365 aa  80.9  0.00000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  32.14 
 
 
394 aa  81.3  0.00000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  29.49 
 
 
389 aa  80.9  0.00000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  30.08 
 
 
734 aa  80.9  0.00000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5903  cell envelope-related transcriptional attenuator  29.19 
 
 
508 aa  79.3  0.00000000000008  Frankia sp. EAN1pec  Bacteria  normal  normal  0.667474 
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  29.31 
 
 
396 aa  79.3  0.00000000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  25.44 
 
 
489 aa  79.3  0.00000000000009  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  28.86 
 
 
380 aa  79  0.0000000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  34.15 
 
 
424 aa  77.8  0.0000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  28.13 
 
 
349 aa  77.4  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  30.05 
 
 
296 aa  77.8  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  28.77 
 
 
312 aa  77.4  0.0000000000004  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  37.71 
 
 
328 aa  77  0.0000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
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