Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_28900 |
Symbol | |
ID | 8388214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3140641 |
End bp | 3142209 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644976921 |
Product | cell envelope-related function transcriptional attenuator common domain protein |
Protein accession | YP_003134696 |
Protein GI | 257056864 |
COG category | [K] Transcription |
COG ID | [COG1316] Transcriptional regulator |
TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.385343 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGACGTC GTCCCACGAG CACGCGTGGG GATCACCGGG GACGTCGGGC CGGGCGACCG GACGGAAGCT CCGTCAGGGC GGTTCCCGCT TCGGAGCAGA AGCGCAGCAA GGGCGGGACC GGGGCCCGGA TCGTCCTGGC CATGGTCTCC GTGCTGGTGT TGACCATCAC CGGCTACGCC TGGGCGGCCA TGAAAGGTTT GGTGGACGGC CTCACGATGG CGGACGTCAT CGGGGAGGAC ACGGGTGAGC TACCGGCGGA CGGGGCGCGT GACATCCTCC TCGTCGGCAT GGACAGCCGG GTCGACGCAC AGGGCAACCC GCTGCCGCAG GACATGCTGG CCAAACTGAA CGCCGGTGTC GCCGACGGCG AGCTCAACAC CGACACGTTG ATCCTGGTGC ACATCCCCAA CGACGGCCGC AAGGCGGTGG CGTTGTCACT GCCGAGGGAT TCGTACGTCA ACATCCCCGG CTTCGGCCAA CACAAGATCA ACTCAGCGTA TGCGCGGGGT AAGGCCGCCG CGAAGGAACG GTTACGCCAG GAAGGCGTCA CCGACGAGCA GGAACTCGAG GTCCGTAGCA ACCAGGAGGG CGCCAAGACC CTCATCGCGA CGGTCGAAGC GCTCACGGGA CAGACCGTCG ACAACTACGC CTCGATCAAC TTGTTGGGGT TCTACGAGAT CACCAACGCC GTCGGCGGTG TCGAGGTGTG CCTGAACCAG GCGACCCGTG ACCCGTATTC GGGCGCGAAC TTCAAGGCCG GCAGGCAGTC GATCTCCGGA GTGGACGCGT TGGCGTTCGT GCGACAACGA CACGGACTGC TACGCGGAGA CCTCGACCGA GTCGTACGCC AGCAGGTGTT CCTGGCCGGA TTGGCCAACA AGGTGTTGTC GGCGGGCACG CTCACGGACC CGGGGAAGTT GGAGCGACTG ACCGAGGCCA TCAAGAAATC GGTCGTGGTG AACAAGGGCT GGGACATCCT GTCGTTCGCC CAACAGATGA AGGATTTCAC CGGTGGCCAG ATCGAGTTCC ACACCATCCC GATCGAGAAT CCGGAATTCG AGACTCCGGA CGGACTCGCC ATCAAGATCA ACCCCAGTGA GGTGCGGAAT TTCGTGGCGA AGCTCTCCGG CAGGAAAGCC GAGGCGTCAC CGACCCCCGC CCCCGAGGAG ATCACCGTCG ACATCTACAA CACGTCGAAC ATCCAAGGCC TGGCCAGCAG TGTCTCGGAG GCACTGGTCG CACAGGGTTT CACGCAGGGC GAGGTGGCCA ACGACACGCC GCGACAAAGC AGTGTGGTGC AGTCCGCCTC CGGTGAGCGG TCCTCCGCGG AGGCGGTGGC CGCGGCGTTG GGTAGGGAGA TCGCCGTGGA GGAGAACCCG GACGTCAGTC CCGGCCACGT ACGCGTTCTG CTCGCCCCCG ACTATCAGCA AAACGGTAAC TCCACGCCGG GCGCTCCCGC CGGAGGCGGC AACACACCCG GGACCTCGGT GACGGGAGCC CCTCGACAAG CCGGTGAGGA GGCGGCCGAA CAACCGATCA CAGCCGATGG TGTGACGTGT GTGAACTGA
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Protein sequence | MRRRPTSTRG DHRGRRAGRP DGSSVRAVPA SEQKRSKGGT GARIVLAMVS VLVLTITGYA WAAMKGLVDG LTMADVIGED TGELPADGAR DILLVGMDSR VDAQGNPLPQ DMLAKLNAGV ADGELNTDTL ILVHIPNDGR KAVALSLPRD SYVNIPGFGQ HKINSAYARG KAAAKERLRQ EGVTDEQELE VRSNQEGAKT LIATVEALTG QTVDNYASIN LLGFYEITNA VGGVEVCLNQ ATRDPYSGAN FKAGRQSISG VDALAFVRQR HGLLRGDLDR VVRQQVFLAG LANKVLSAGT LTDPGKLERL TEAIKKSVVV NKGWDILSFA QQMKDFTGGQ IEFHTIPIEN PEFETPDGLA IKINPSEVRN FVAKLSGRKA EASPTPAPEE ITVDIYNTSN IQGLASSVSE ALVAQGFTQG EVANDTPRQS SVVQSASGER SSAEAVAAAL GREIAVEENP DVSPGHVRVL LAPDYQQNGN STPGAPAGGG NTPGTSVTGA PRQAGEEAAE QPITADGVTC VN
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