| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6827 |
|---|
| Symbol | |
|---|
| ID | 5675140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8320724 |
|---|
| End bp | 8322274 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641245676 |
|---|
| Product | cell envelope-related transcriptional attenuator |
|---|
| Protein accession | YP_001511067 |
|---|
| Protein GI | 158318559 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1316] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGGAG ATGCACCGCT TCCCTCCCAG CTAAGCCTGC GAGGTGACGG CAGATCCGGC
CGATCCCGGC GCGGGCGCGT TCTCGGTGGG CGGTTTGGTG CCGCACTTGC GGCCGGGCTC
TCCGTCACCG TGCTGCTGTT CAGTGTGGGT GGCTGGTCGC TGTACGCCTA TGCCAACGGC
AACGTCACGC ATATTGACCT TGATCTGGGC GGCGATCGTC CGCCCGCGGA GCACGACGTC
GCGAACTATC TACTCGTCGG CACGGACAGC CGCGCGGGCA CCGGCGACGA GTACGGCGGC
TCCTCGCTCG TCGCCGGCCA GCGCTCTGAC ACCACGATGC TGATCCATGT GGCCGAGGAC
GGGGCCACCA CCATGGTTTC GTTCCCGCGC GACACCCTCG TCGTCATTCC CGAGTACACC
GACACGGCCG GAAAGGTCCA CAAGAAGCAC CGGGGCAAGT TCAACTCGGC GATCACCGAC
GGCGGCCCGT CGCTGCTGGT GAAGATGATC GAGAGCCTGA CCGGGATGCG GGTCGACCAC
TACGTGTCGG TCGACCTCGC GGGCTTCAAA CAGATCACCG ACGCGATCGG CGGCGTCGAC
GTCTGCGTGC TGCCCTCGGA CTTCAAGGAC CGCTTCCAGG ACGACAACAA GCGGTGGCGG
GTGAGCACCA ACACCAACGA CACGATGAGC GGCTGGTCCG GCGGCCCGGG TACCCTGCAC
GTCAACGGCG AGCAGGCACT CGCGTTCGTC CGGCAGCGGC ACGGCTTCAT GCAGGGCGAC
ATCGCCCGGA TCAACCGCCA GCAGCAGTTC CTCGGCGCCG TGCTCCGCAA GGCCACCAGC
GGCGACGTCC TGACAAACCC ACTCAAGTCG TCGGCGCTGC TCCGGGCCGC GACCGACGCG
GTCACCCTCG GTAACACCAC ACTCGACGAG CTCATGGCCC TCGGACTGTC GATGAAGGGC
ATGGCGGCCG GCACGATGCA CGTCGAGACA CTGCTGACCC GCGCGCCCGG CCTCGCCGAC
GGCGGAAACC CGAACGACGG AACGCTGCCC GGCTTCGGCG CGGTGCAGCT CTACGACCCG
GTCGACCTCG CGAAGATCGT CGTTCCGCTG GGCGGCCAGG TCGACGGCGT CACGCCTGAG
GACCTGACCG CCTCGGCCAC GCCCGGTCCG GTGACCGTCC CGCCCGCGCA GATCGCTGTC
GCCGTCTACA ACGGCTCCGG CACGTCCGGC CTGGCGGCGA AGGTGACCAC GGCGCTGGTG
CGGGAGGGGT TCCAGGCGAC CAGCGCCGGC AACGCCGACC CCCGCGCGGC GTCACAGGTG
CTCTACGGCT CTGGTCAGCA GCAGGCCGCG TGGACGGTGC AGGCGGCGGT ACCCGGCTCG
ATCGCCCGCG CAGACTCGAC CATCACCGGG ATCCACCTCA TCCTCGGCAG CGGGTACACC
GGCGTCGTCG CCCCGGCGAT GGCGGATGCC ACACCCGCCG CCGGCACGAC GCCCGCAGCC
CCGGCGGCCG TCGCACCGCA GGGCCCGCCG CCACCGCCCT GCACTCTGTG A
|
|---|
| Protein sequence | MPGDAPLPSQ LSLRGDGRSG RSRRGRVLGG RFGAALAAGL SVTVLLFSVG GWSLYAYANG
NVTHIDLDLG GDRPPAEHDV ANYLLVGTDS RAGTGDEYGG SSLVAGQRSD TTMLIHVAED
GATTMVSFPR DTLVVIPEYT DTAGKVHKKH RGKFNSAITD GGPSLLVKMI ESLTGMRVDH
YVSVDLAGFK QITDAIGGVD VCVLPSDFKD RFQDDNKRWR VSTNTNDTMS GWSGGPGTLH
VNGEQALAFV RQRHGFMQGD IARINRQQQF LGAVLRKATS GDVLTNPLKS SALLRAATDA
VTLGNTTLDE LMALGLSMKG MAAGTMHVET LLTRAPGLAD GGNPNDGTLP GFGAVQLYDP
VDLAKIVVPL GGQVDGVTPE DLTASATPGP VTVPPAQIAV AVYNGSGTSG LAAKVTTALV
REGFQATSAG NADPRAASQV LYGSGQQQAA WTVQAAVPGS IARADSTITG IHLILGSGYT
GVVAPAMADA TPAAGTTPAA PAAVAPQGPP PPPCTL
|
|---|
| |