Gene Svir_06080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_06080 
Symbol 
ID8385946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp622598 
End bp624214 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content66% 
IMG OID644974705 
Productcell envelope-related function transcriptional attenuator common domain protein 
Protein accessionYP_003132506 
Protein GI257054674 
COG category[K] Transcription 
COG ID[COG1316] Transcriptional regulator 
TIGRFAM ID[TIGR00350] cell envelope-related function transcriptional attenuator common domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.832186 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.188153 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGACG GGGCACGGGA ACCGCTCGAC ACGCCAGTCA TACGAAGCAA GTCCCGGCTT 
CGCACCATCG GCCTCATCGG CGGCAGAACC CTCGTGTCCT TGCTGTCCGT CGTGGTGTTG
GCACTCACTG CCTACGGCTG GCAGATGATC GGGACCGCAC AGTCGAACCT CGCCACGACC
GACGTGTTCG ACGACCAGGA GCCCGGAGCG AAACCGCTGG ACGGCTCCGT CGACATCCTC
CTCGTCGGCA TCGACAGTCG CACCGACGCG CAGGGCAACC CCCTGCCGCA GGAAGTGCTC
GACATGCTCC ACGCCGGCAA GGACGAGGGA ACCAAACAGA CCGACACGAT GATCCTGGTG
CACATCCCCC AGGACGGCAC CAGCGCCACC GCCATCTCCT TCCCCCGGGA CTCCTGGGTG
GAGCTGGCGG GCGGCTACGG GACCAACCGG CTCAACACCG CGTTCCGCTT CGCCTACAAC
CACACCCGCA ACACCCTGCT CGCCCAGGGG GAGACCGACA CCGAGGCGAT CGAGAAGCAG
GCCGAGGCCG AGGGGCGCAA GAACCTCATC GCCACCATCG AACAGCTCAT CGGCCGGCCC
GGCATGATCG ACCGGTACGC CGAGGTGAAC CTGGCGAGTT TCTACGAGAT CACCAAAGCC
ATCGGCGGCA TCGAGGTCTG CCTGAAACAA CCCGCGAAGG AAGCCAAGTC CGGCATCAAC
CTCCCCGCAG GAAGGCAGAC CATCGAAGGG GTGCAGGCGC TGGCGTTCGT GCGACAGCGC
ACCGGACTCC CCCGCGGTGA CCTGGACCGG ATCAACCGGC AGCAGGCGTT CTTGTCCGGC
CTCGCCCGCA AGATGCTCTC CAAGGAGATC CTGCTGAACC CGTCACGCCT GTCCGAGGTG
ATCTCGGCCG TGCAGAAGTC GGTGGTCGTC TCCAAGGACT GGGACCTGCT GGAGTTCGCC
CATCAGATGC GCAACCTCTC CGGTGGGCAG ATCGAGTTCC ACACGGTCCC CGTGGTGCAG
GACATGTACG TCAACGGCGC GTCCGTGCTG GAGGTGGACC CCGCGCAGAT CAGGGCTTTC
ATCGACGAAT TGGTCCCGAG GGAGACCGAA GGCGATCCGC GCATGGACTC GGTGCCGCAG
ACGGTGCCGG GCGCGGAGGC CTACACGGTG CACATCTACA ACGCCACGGC GGACCCCTCC
CTGGGTGAGG CCACGCGAAC GCTGTTGGCG AGTCAGGGTT TCGGCGGGGA AAGTTACGCA
CAATCAGACC CGCAGAACTC CACGGTGATC TACCATGCTC CGGGCGAGCA AGCCGGTGTC
GACGCGCTGC GTACGGCTTT GGGCGTGGAC TTCGCCGCCC AGGCCGACCC ACAGCTGGCC
CCCGGAACGC TCAACCTGTA CCTCGGCGGG GACTTCACGT TGCCCCCCAC GACCCAGGGC
GCGGAAGGGC TCACCGGGGT TCAGCCGCTG CGGACCGGGA GTGTGGGGTA TCGGGCGCAA
CAACAGTCGG ACACCGGGCA GAGCGCTCCG GAGTCCGGGG AACCCGGTAC GGACGAGGGA
TCGGAGGACG CCGAGGACGG ACCGATCACC GCTGGTGGAG TGCCGTGCAT CTACTAG
 
Protein sequence
MTDGAREPLD TPVIRSKSRL RTIGLIGGRT LVSLLSVVVL ALTAYGWQMI GTAQSNLATT 
DVFDDQEPGA KPLDGSVDIL LVGIDSRTDA QGNPLPQEVL DMLHAGKDEG TKQTDTMILV
HIPQDGTSAT AISFPRDSWV ELAGGYGTNR LNTAFRFAYN HTRNTLLAQG ETDTEAIEKQ
AEAEGRKNLI ATIEQLIGRP GMIDRYAEVN LASFYEITKA IGGIEVCLKQ PAKEAKSGIN
LPAGRQTIEG VQALAFVRQR TGLPRGDLDR INRQQAFLSG LARKMLSKEI LLNPSRLSEV
ISAVQKSVVV SKDWDLLEFA HQMRNLSGGQ IEFHTVPVVQ DMYVNGASVL EVDPAQIRAF
IDELVPRETE GDPRMDSVPQ TVPGAEAYTV HIYNATADPS LGEATRTLLA SQGFGGESYA
QSDPQNSTVI YHAPGEQAGV DALRTALGVD FAAQADPQLA PGTLNLYLGG DFTLPPTTQG
AEGLTGVQPL RTGSVGYRAQ QQSDTGQSAP ESGEPGTDEG SEDAEDGPIT AGGVPCIY