More than 300 homologs were found in PanDaTox collection
for query gene Sked_08560 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  100 
 
 
434 aa  857    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  55.28 
 
 
434 aa  408  1.0000000000000001e-112  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_014151  Cfla_2384  cell envelope-related transcriptional attenuator  62.79 
 
 
303 aa  381  1e-104  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.174416  hitchhiker  0.00797054 
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  65.85 
 
 
363 aa  377  1e-103  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  60.88 
 
 
313 aa  362  1e-98  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  51.89 
 
 
296 aa  290  4e-77  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  38.85 
 
 
489 aa  271  1e-71  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_013721  HMPREF0424_0588  putative transcriptional regulator  42.52 
 
 
432 aa  229  7e-59  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.952975 
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  45.36 
 
 
407 aa  226  5.0000000000000005e-58  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  38.94 
 
 
393 aa  220  5e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  45.23 
 
 
320 aa  211  2e-53  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  43.34 
 
 
404 aa  208  1e-52  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  38.78 
 
 
394 aa  196  9e-49  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  37.62 
 
 
307 aa  192  7e-48  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  40.07 
 
 
466 aa  192  8e-48  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  37.84 
 
 
311 aa  189  1e-46  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  37.84 
 
 
311 aa  189  1e-46  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  37.84 
 
 
311 aa  189  1e-46  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  37.12 
 
 
409 aa  187  3e-46  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  40.14 
 
 
336 aa  186  5e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  41.98 
 
 
307 aa  185  1.0000000000000001e-45  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  37.34 
 
 
463 aa  180  4.999999999999999e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  34.84 
 
 
497 aa  180  5.999999999999999e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1395  cell envelope-related transcriptional attenuator  40.62 
 
 
404 aa  179  8e-44  Nocardioides sp. JS614  Bacteria  normal  0.330473  n/a   
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  37.13 
 
 
306 aa  179  9e-44  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  36.8 
 
 
390 aa  179  1e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  39.66 
 
 
424 aa  178  2e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  37.5 
 
 
504 aa  176  9e-43  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  40.17 
 
 
326 aa  170  4e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  35.56 
 
 
505 aa  169  1e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  35.13 
 
 
509 aa  164  4.0000000000000004e-39  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  37.22 
 
 
491 aa  158  2e-37  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  35.32 
 
 
573 aa  157  4e-37  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  33.01 
 
 
512 aa  156  6e-37  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  36.5 
 
 
625 aa  149  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  32.39 
 
 
545 aa  148  2.0000000000000003e-34  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  32.48 
 
 
486 aa  148  2.0000000000000003e-34  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  34.35 
 
 
521 aa  144  2e-33  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  33.86 
 
 
382 aa  144  3e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  35 
 
 
516 aa  143  6e-33  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  32.74 
 
 
468 aa  143  7e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  33.33 
 
 
520 aa  136  6.0000000000000005e-31  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  34.51 
 
 
420 aa  136  6.0000000000000005e-31  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  33.1 
 
 
414 aa  136  8e-31  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  31.08 
 
 
549 aa  135  1.9999999999999998e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  33.58 
 
 
453 aa  134  3.9999999999999996e-30  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  42.69 
 
 
304 aa  132  1.0000000000000001e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  34.02 
 
 
530 aa  132  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  32.49 
 
 
468 aa  132  2.0000000000000002e-29  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  29.21 
 
 
560 aa  131  2.0000000000000002e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  34.08 
 
 
478 aa  130  3e-29  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  30.9 
 
 
732 aa  130  5.0000000000000004e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  31.48 
 
 
567 aa  129  8.000000000000001e-29  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  34.87 
 
 
676 aa  129  9.000000000000001e-29  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  35.91 
 
 
618 aa  128  2.0000000000000002e-28  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  33.21 
 
 
349 aa  128  2.0000000000000002e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  31.42 
 
 
481 aa  127  3e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  28.76 
 
 
480 aa  125  1e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  31.68 
 
 
493 aa  125  1e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  41.21 
 
 
304 aa  124  3e-27  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5058  membrane-bound transcriptional regulator LytR  39.68 
 
 
304 aa  124  4e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  35.91 
 
 
358 aa  123  6e-27  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  36.36 
 
 
312 aa  122  9e-27  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  31.45 
 
 
512 aa  122  9.999999999999999e-27  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  34.3 
 
 
506 aa  122  1.9999999999999998e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  37.56 
 
 
379 aa  121  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  31.8 
 
 
410 aa  121  1.9999999999999998e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  31.07 
 
 
493 aa  122  1.9999999999999998e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  29.86 
 
 
522 aa  120  3e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_009513  Lreu_1057  cell envelope-related transcriptional attenuator  34.09 
 
 
333 aa  121  3e-26  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.0371332  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  31.95 
 
 
584 aa  120  3.9999999999999996e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  30.65 
 
 
362 aa  120  3.9999999999999996e-26  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_011725  BCB4264_A5387  membrane-bound transcriptional regulator LytR  38.83 
 
 
299 aa  120  3.9999999999999996e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5436  membrane-bound transcriptional regulator LytR  39.39 
 
 
302 aa  120  4.9999999999999996e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  40.12 
 
 
303 aa  120  6e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4961  membrane-bound transcriptional regulator LytR  40.12 
 
 
303 aa  120  6e-26  Bacillus cereus E33L  Bacteria  normal  0.0205697  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  40.12 
 
 
303 aa  120  6e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  39.25 
 
 
383 aa  120  7e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  42.2 
 
 
374 aa  119  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  31.91 
 
 
374 aa  118  1.9999999999999998e-25  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_009674  Bcer98_3796  membrane-bound transcriptional regulator LytR  38.79 
 
 
302 aa  118  1.9999999999999998e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.0000323774  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  42.77 
 
 
375 aa  118  1.9999999999999998e-25  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  42.77 
 
 
375 aa  118  1.9999999999999998e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  42.77 
 
 
375 aa  118  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  42.77 
 
 
375 aa  118  1.9999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  42.77 
 
 
375 aa  118  1.9999999999999998e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  33.33 
 
 
481 aa  118  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  33.33 
 
 
408 aa  118  1.9999999999999998e-25  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  34.93 
 
 
419 aa  118  1.9999999999999998e-25  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  42.2 
 
 
377 aa  117  3e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  38.79 
 
 
302 aa  117  3e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  42.2 
 
 
377 aa  117  3e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  42.2 
 
 
372 aa  118  3e-25  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  35.19 
 
 
319 aa  117  3.9999999999999997e-25  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  35.91 
 
 
395 aa  117  5e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  29.41 
 
 
308 aa  117  5e-25  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_011773  BCAH820_5355  membrane-bound transcriptional regulator LytR  38.95 
 
 
303 aa  116  7.999999999999999e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  30.19 
 
 
490 aa  115  2.0000000000000002e-24  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  30.19 
 
 
490 aa  115  2.0000000000000002e-24  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  30.19 
 
 
490 aa  115  2.0000000000000002e-24  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
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