More than 300 homologs were found in PanDaTox collection
for query gene Jden_2257 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  100 
 
 
362 aa  735    Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  45.83 
 
 
374 aa  238  1e-61  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  40.06 
 
 
349 aa  238  1e-61  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  44.81 
 
 
381 aa  223  6e-57  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  43.82 
 
 
377 aa  218  2e-55  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  43.07 
 
 
390 aa  217  2e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3034  cell envelope-related transcriptional attenuator  37.28 
 
 
379 aa  186  6e-46  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.63975 
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  33.43 
 
 
382 aa  181  1e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  36.92 
 
 
414 aa  180  4e-44  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  37.05 
 
 
420 aa  172  9e-42  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  37.32 
 
 
486 aa  171  2e-41  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  33.86 
 
 
521 aa  164  2.0000000000000002e-39  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  34.52 
 
 
497 aa  163  5.0000000000000005e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_03580  cell envelope-related function transcriptional attenuator common domain protein  37 
 
 
448 aa  162  7e-39  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.742286  normal  0.880699 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  36.64 
 
 
481 aa  159  6e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  33.63 
 
 
512 aa  158  1e-37  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  38.56 
 
 
509 aa  157  2e-37  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  37.45 
 
 
625 aa  157  2e-37  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  37.08 
 
 
468 aa  157  3e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  35.39 
 
 
573 aa  152  8e-36  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  37.45 
 
 
307 aa  150  4e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  35.53 
 
 
504 aa  149  6e-35  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  32.33 
 
 
400 aa  147  3e-34  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  36.67 
 
 
491 aa  146  5e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  31.8 
 
 
584 aa  140  3e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  32.47 
 
 
530 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  36.33 
 
 
506 aa  140  3.9999999999999997e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  31.68 
 
 
453 aa  137  2e-31  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  34.42 
 
 
336 aa  136  4e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  30.94 
 
 
480 aa  135  9.999999999999999e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  31.8 
 
 
732 aa  135  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  34.87 
 
 
302 aa  135  1.9999999999999998e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  31.94 
 
 
478 aa  134  1.9999999999999998e-30  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  32.08 
 
 
310 aa  132  6.999999999999999e-30  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  34.71 
 
 
409 aa  132  9e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  30.46 
 
 
379 aa  132  1.0000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  32.48 
 
 
619 aa  131  2.0000000000000002e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  31.97 
 
 
410 aa  131  2.0000000000000002e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  36.4 
 
 
545 aa  130  3e-29  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  34.6 
 
 
505 aa  130  3e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  30.56 
 
 
313 aa  130  4.0000000000000003e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  34.29 
 
 
311 aa  127  2.0000000000000002e-28  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  36.44 
 
 
311 aa  127  3e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.4 
 
 
676 aa  127  3e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  36.44 
 
 
311 aa  127  3e-28  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_5355  membrane-bound transcriptional regulator LytR  34.23 
 
 
303 aa  127  4.0000000000000003e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  36.36 
 
 
490 aa  126  5e-28  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  33.08 
 
 
303 aa  126  7e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  33.08 
 
 
303 aa  126  7e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  31.02 
 
 
540 aa  126  7e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_006274  BCZK4961  membrane-bound transcriptional regulator LytR  33.46 
 
 
303 aa  125  8.000000000000001e-28  Bacillus cereus E33L  Bacteria  normal  0.0205697  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  31.7 
 
 
522 aa  125  9e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  31.66 
 
 
560 aa  125  1e-27  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  33.1 
 
 
516 aa  125  2e-27  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  30.82 
 
 
512 aa  124  2e-27  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  29.75 
 
 
643 aa  124  2e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  30.3 
 
 
465 aa  124  3e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  31.97 
 
 
393 aa  124  3e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  37.27 
 
 
307 aa  124  3e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  37.5 
 
 
304 aa  123  5e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  35.29 
 
 
466 aa  123  5e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  34.41 
 
 
394 aa  122  7e-27  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  35.38 
 
 
407 aa  122  9.999999999999999e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  34 
 
 
526 aa  122  9.999999999999999e-27  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  32.17 
 
 
395 aa  121  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  33.86 
 
 
320 aa  121  9.999999999999999e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6384  cell envelope-related transcriptional attenuator  29.18 
 
 
352 aa  120  3e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  31.01 
 
 
443 aa  120  3.9999999999999996e-26  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  29.27 
 
 
734 aa  120  3.9999999999999996e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  33.47 
 
 
395 aa  120  4.9999999999999996e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  30.55 
 
 
468 aa  119  6e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  34.82 
 
 
434 aa  119  6e-26  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  33.76 
 
 
383 aa  119  6e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  32.11 
 
 
417 aa  119  7.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5058  membrane-bound transcriptional regulator LytR  34.19 
 
 
304 aa  119  9e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  26.49 
 
 
406 aa  119  9e-26  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  29.83 
 
 
391 aa  119  9.999999999999999e-26  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  32.87 
 
 
493 aa  119  9.999999999999999e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  32.53 
 
 
377 aa  117  1.9999999999999998e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  34.48 
 
 
319 aa  118  1.9999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  35.14 
 
 
405 aa  118  1.9999999999999998e-25  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  29.77 
 
 
304 aa  118  1.9999999999999998e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  32.13 
 
 
377 aa  117  3e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1275  cell envelope-related transcriptional attenuator  34.2 
 
 
477 aa  117  3e-25  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000150477  n/a   
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  31.6 
 
 
520 aa  117  3e-25  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  34.23 
 
 
495 aa  117  3e-25  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  34.52 
 
 
424 aa  116  5e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  30.09 
 
 
517 aa  117  5e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_008699  Noca_1739  cell envelope-related transcriptional attenuator  33.48 
 
 
302 aa  115  8.999999999999998e-25  Nocardioides sp. JS614  Bacteria  normal  0.140263  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  32.91 
 
 
374 aa  115  1.0000000000000001e-24  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  32.64 
 
 
493 aa  115  1.0000000000000001e-24  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  33.73 
 
 
516 aa  115  2.0000000000000002e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  32.13 
 
 
375 aa  114  2.0000000000000002e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  34.42 
 
 
375 aa  114  2.0000000000000002e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  34.42 
 
 
375 aa  114  2.0000000000000002e-24  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  32.91 
 
 
372 aa  114  2.0000000000000002e-24  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  32.13 
 
 
375 aa  114  2.0000000000000002e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  28.57 
 
 
567 aa  115  2.0000000000000002e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  35.17 
 
 
306 aa  114  2.0000000000000002e-24  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  32.29 
 
 
618 aa  114  2.0000000000000002e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
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