More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_1540 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  100 
 
 
328 aa  627  1e-179  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  34.35 
 
 
319 aa  143  4e-33  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  38.05 
 
 
445 aa  139  4.999999999999999e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  32.78 
 
 
414 aa  137  2e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  35 
 
 
374 aa  136  5e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  34.54 
 
 
380 aa  136  6.0000000000000005e-31  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_002976  SERP0932  transcriptional regulator, putative  30.56 
 
 
329 aa  135  7.000000000000001e-31  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  36.2 
 
 
497 aa  135  7.000000000000001e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  35 
 
 
377 aa  135  9.999999999999999e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  34.58 
 
 
372 aa  134  1.9999999999999998e-30  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  40.52 
 
 
509 aa  134  1.9999999999999998e-30  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  35 
 
 
375 aa  132  6e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  35 
 
 
375 aa  132  6e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  35 
 
 
375 aa  132  6.999999999999999e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  35 
 
 
375 aa  132  6.999999999999999e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  35 
 
 
375 aa  132  6.999999999999999e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  34.58 
 
 
377 aa  132  9e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  32.92 
 
 
374 aa  131  1.0000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  32.68 
 
 
419 aa  130  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  38.12 
 
 
456 aa  130  3e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  38.24 
 
 
418 aa  130  4.0000000000000003e-29  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_011884  Cyan7425_3856  cell envelope-related transcriptional attenuator  36.36 
 
 
451 aa  129  5.0000000000000004e-29  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5387  membrane-bound transcriptional regulator LytR  34.65 
 
 
299 aa  129  5.0000000000000004e-29  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  33.95 
 
 
304 aa  129  6e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_013739  Cwoe_5265  cell envelope-related transcriptional attenuator  33.57 
 
 
414 aa  128  1.0000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.534178 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  29.82 
 
 
383 aa  128  1.0000000000000001e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  33.02 
 
 
302 aa  127  2.0000000000000002e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  32.07 
 
 
563 aa  127  2.0000000000000002e-28  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  35.09 
 
 
411 aa  126  4.0000000000000003e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1423  cell envelope-related transcriptional attenuator  29.3 
 
 
327 aa  126  5e-28  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.302612  n/a   
 
 
-
 
NC_009632  SaurJH1_1451  transcription attenuator LytR  29.3 
 
 
327 aa  126  5e-28  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2334  cell envelope-related transcriptional attenuator  30.92 
 
 
318 aa  125  1e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.591324  n/a   
 
 
-
 
NC_009632  SaurJH1_2377  transcription attenuator LytR  30.92 
 
 
318 aa  125  1e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5058  membrane-bound transcriptional regulator LytR  33.17 
 
 
304 aa  125  1e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  30.25 
 
 
335 aa  125  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  33.23 
 
 
505 aa  124  2e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_010718  Nther_2377  cell envelope-related transcriptional attenuator  30.35 
 
 
344 aa  124  2e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00145979  normal 
 
 
-
 
NC_002976  SERP1893  transcriptional regulator, putative  29.35 
 
 
316 aa  124  3e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  32.08 
 
 
377 aa  124  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  32.56 
 
 
303 aa  123  4e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  27.36 
 
 
308 aa  123  4e-27  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  32.56 
 
 
303 aa  123  4e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_009674  Bcer98_3796  membrane-bound transcriptional regulator LytR  30.84 
 
 
302 aa  123  4e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.0000323774  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  33.46 
 
 
390 aa  123  6e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1252  cell envelope-related transcriptional attenuator  30.45 
 
 
403 aa  122  9e-27  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000912522  n/a   
 
 
-
 
NC_006274  BCZK4961  membrane-bound transcriptional regulator LytR  32.09 
 
 
303 aa  122  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  0.0205697  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  34.36 
 
 
504 aa  122  9.999999999999999e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_011658  BCAH187_A5436  membrane-bound transcriptional regulator LytR  33.68 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  33.01 
 
 
405 aa  121  9.999999999999999e-27  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  30.92 
 
 
426 aa  121  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_011773  BCAH820_5355  membrane-bound transcriptional regulator LytR  32.09 
 
 
303 aa  120  3e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  32.56 
 
 
304 aa  120  3e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  27.76 
 
 
337 aa  120  3.9999999999999996e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  25.99 
 
 
408 aa  120  3.9999999999999996e-26  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  41.01 
 
 
414 aa  119  6e-26  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  28.32 
 
 
406 aa  119  7e-26  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  33.85 
 
 
512 aa  119  7.999999999999999e-26  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  40.97 
 
 
527 aa  118  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  30 
 
 
313 aa  118  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  38.81 
 
 
420 aa  119  9.999999999999999e-26  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  34.43 
 
 
349 aa  118  9.999999999999999e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0152  cell envelope-related transcriptional attenuator  38.11 
 
 
271 aa  118  1.9999999999999998e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  35.46 
 
 
486 aa  117  3e-25  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  39.81 
 
 
320 aa  117  3.9999999999999997e-25  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  42.33 
 
 
311 aa  116  3.9999999999999997e-25  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  42.33 
 
 
311 aa  116  5e-25  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  42.33 
 
 
311 aa  116  5e-25  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP0640  transcriptional regulator, putative  32.22 
 
 
412 aa  116  6e-25  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.00230389  n/a   
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  34.33 
 
 
502 aa  116  6e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  27.27 
 
 
310 aa  115  7.999999999999999e-25  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  40.84 
 
 
466 aa  115  1.0000000000000001e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  36.67 
 
 
436 aa  115  1.0000000000000001e-24  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2604  cell envelope-related transcriptional attenuator  32.9 
 
 
471 aa  115  1.0000000000000001e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.22991 
 
 
-
 
NC_009523  RoseRS_4519  cell envelope-related transcriptional attenuator  35.56 
 
 
505 aa  115  1.0000000000000001e-24  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2233  cell envelope-related transcriptional attenuator  29.48 
 
 
303 aa  114  2.0000000000000002e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1005  cell envelope-related transcriptional attenuator  27.56 
 
 
285 aa  114  2.0000000000000002e-24  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3582  cell envelope-related transcriptional attenuator  34.76 
 
 
492 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  36.63 
 
 
344 aa  114  3e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2524  cell envelope-related transcriptional attenuator  34.33 
 
 
492 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_1572  cell envelope-related transcriptional attenuator  41.26 
 
 
384 aa  113  4.0000000000000004e-24  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.0072424  normal  0.757675 
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  28.24 
 
 
322 aa  113  4.0000000000000004e-24  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_009632  SaurJH1_1138  transcription attenuator LytR  31.67 
 
 
405 aa  113  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.195072  n/a   
 
 
-
 
NC_009487  SaurJH9_1115  hypothetical protein  31.67 
 
 
405 aa  113  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.108667  n/a   
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  38.27 
 
 
512 aa  112  6e-24  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_013203  Apar_1295  cell envelope-related transcriptional attenuator  29.89 
 
 
407 aa  112  9e-24  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.865299 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  33.04 
 
 
495 aa  112  1.0000000000000001e-23  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  42.27 
 
 
528 aa  111  1.0000000000000001e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  33.77 
 
 
503 aa  112  1.0000000000000001e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  29.09 
 
 
317 aa  112  1.0000000000000001e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1208  cell envelope-related transcriptional attenuator  26.69 
 
 
330 aa  111  1.0000000000000001e-23  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000721845  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  37.85 
 
 
409 aa  112  1.0000000000000001e-23  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013161  Cyan8802_1138  cell envelope-related transcriptional attenuator  32.51 
 
 
481 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.441684  normal 
 
 
-
 
NC_011726  PCC8801_1109  cell envelope-related transcriptional attenuator  32.51 
 
 
481 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  35.53 
 
 
549 aa  111  2.0000000000000002e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  40.54 
 
 
336 aa  110  2.0000000000000002e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  36.06 
 
 
443 aa  110  3e-23  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  36.61 
 
 
455 aa  110  3e-23  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  32.28 
 
 
506 aa  110  3e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  28.19 
 
 
337 aa  110  4.0000000000000004e-23  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  28.19 
 
 
338 aa  110  4.0000000000000004e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
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