215 homologs were found in PanDaTox collection
for query gene Reut_A2827 on replicon NC_007347
Organism: Ralstonia eutropha JMP134



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007347  Reut_A2827  response regulator receiver  100 
 
 
348 aa  723    Ralstonia eutropha JMP134  Bacteria  normal  0.0210886  n/a   
 
 
-
 
NC_007973  Rmet_2966  response regulator receiver domain-containing protein  87.57 
 
 
349 aa  650    Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2734  response regulator transcription regulator protein  66.86 
 
 
345 aa  499  1e-140  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2973  response regulator receiver protein  65.4 
 
 
345 aa  493  9.999999999999999e-139  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2563  response regulator receiver protein  65.4 
 
 
345 aa  493  9.999999999999999e-139  Ralstonia pickettii 12D  Bacteria  normal  normal  0.232124 
 
 
-
 
NC_007953  Bxe_C0017  response regulator receiver domain-containing protein  36.06 
 
 
333 aa  218  8.999999999999998e-56  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.93116 
 
 
-
 
NC_006368  lpp2788  hypothetical protein  32.84 
 
 
341 aa  177  2e-43  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2657  hypothetical protein  32.84 
 
 
341 aa  177  2e-43  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007509  Bcep18194_C7079  response regulator receiver domain-containing protein  30.22 
 
 
312 aa  129  8.000000000000001e-29  Burkholderia sp. 383  Bacteria  normal  normal  0.805189 
 
 
-
 
NC_010676  Bphyt_4504  response regulator receiver protein  29.85 
 
 
320 aa  128  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0823  response regulator receiver domain-containing protein  29.74 
 
 
320 aa  123  6e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.526034 
 
 
-
 
NC_007948  Bpro_4047  response regulator receiver domain-containing protein  27.68 
 
 
350 aa  109  9.000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.251517 
 
 
-
 
NC_008781  Pnap_3514  response regulator receiver protein  33.15 
 
 
342 aa  95.9  9e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.95841  normal 
 
 
-
 
NC_008757  Pnap_4354  response regulator receiver protein  29.38 
 
 
328 aa  95.1  2e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.508618 
 
 
-
 
NC_007949  Bpro_5019  response regulator receiver domain-containing protein  31.35 
 
 
328 aa  90.5  4e-17  Polaromonas sp. JS666  Bacteria  normal  0.618067  normal 
 
 
-
 
NC_007901  Rfer_4404  response regulator receiver domain-containing protein  24.19 
 
 
328 aa  66.6  0.0000000006  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1005  multi-sensor Signal transduction histidine kinase  32.5 
 
 
646 aa  54.7  0.000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.442988  decreased coverage  0.0000217029 
 
 
-
 
NC_010814  Glov_3544  two component transcriptional regulator, LytTR family  36.14 
 
 
251 aa  53.9  0.000004  Geobacter lovleyi SZ  Bacteria  normal  0.0394969  n/a   
 
 
-
 
NC_009092  Shew_1969  two component LuxR family transcriptional regulator  37.84 
 
 
199 aa  53.1  0.000007  Shewanella loihica PV-4  Bacteria  normal  normal  0.0986563 
 
 
-
 
NC_008726  Mvan_1371  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.54 
 
 
582 aa  52  0.00002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.858891  normal  0.520575 
 
 
-
 
NC_009338  Mflv_5003  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.54 
 
 
554 aa  51.6  0.00002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  33.65 
 
 
446 aa  50.4  0.00004  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_011662  Tmz1t_3376  two component transcriptional regulator, winged helix family  38.36 
 
 
242 aa  50.8  0.00004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0418  multi-sensor signal transduction histidine kinase  36.78 
 
 
473 aa  49.7  0.00007  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.753978 
 
 
-
 
NC_009921  Franean1_2259  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.85 
 
 
582 aa  50.1  0.00007  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0983279 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  32.41 
 
 
292 aa  49.7  0.00007  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_009901  Spea_1432  response regulator receiver modulated serine phosphatase  32.91 
 
 
407 aa  49.3  0.00009  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  34 
 
 
455 aa  49.3  0.0001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0064  Signal transduction histidine kinase  45 
 
 
1714 aa  49.3  0.0001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.274411 
 
 
-
 
NC_009712  Mboo_0339  multi-sensor signal transduction histidine kinase  30.2 
 
 
771 aa  48.9  0.0001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.84298 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  46.43 
 
 
439 aa  48.9  0.0001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0457  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  30.15 
 
 
578 aa  48.9  0.0001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.809625  normal  0.293491 
 
 
-
 
NC_007954  Sden_3603  GGDEF domain-containing protein  34.17 
 
 
570 aa  48.1  0.0002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2350  putative PAS/PAC sensor protein  34.04 
 
 
450 aa  48.5  0.0002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_0366  signal transduction histidine kinase, nitrogen specific, NtrB  36.36 
 
 
1081 aa  48.1  0.0002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  34.58 
 
 
203 aa  48.5  0.0002  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_011365  Gdia_0044  two component transcriptional regulator, winged helix family  27.7 
 
 
238 aa  47.4  0.0003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.164674  normal  0.0215513 
 
 
-
 
NC_007517  Gmet_2304  response regulator receiver (CheY-like) modulated CheB methylesterase  23.36 
 
 
360 aa  47.8  0.0003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2541  two component, sigma54 specific, Fis family transcriptional regulator  27.24 
 
 
438 aa  47.8  0.0003  Jannaschia sp. CCS1  Bacteria  normal  0.281957  normal  0.250281 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  29.93 
 
 
303 aa  47.8  0.0003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1070  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  36.9 
 
 
554 aa  47  0.0004  Mycobacterium sp. MCS  Bacteria  normal  0.970037  n/a   
 
 
-
 
NC_013174  Jden_1802  two component transcriptional regulator, winged helix family  26.62 
 
 
232 aa  47.4  0.0004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.150286  normal 
 
 
-
 
NC_013202  Hmuk_2699  multi-sensor signal transduction histidine kinase  30.48 
 
 
446 aa  47  0.0004  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.112792  normal  0.0892885 
 
 
-
 
NC_008705  Mkms_1086  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  36.9 
 
 
554 aa  47  0.0004  Mycobacterium sp. KMS  Bacteria  normal  0.667334  normal  0.027498 
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
450 aa  47.4  0.0004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2968  two component LuxR family transcriptional regulator  35.48 
 
 
207 aa  47  0.0005  Caulobacter sp. K31  Bacteria  normal  normal  0.138 
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  38.98 
 
 
269 aa  47  0.0005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2298  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  32.18 
 
 
569 aa  47  0.0005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2887  response regulator receiver modulated serine phosphatase  29.73 
 
 
423 aa  47  0.0005  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1097  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  30.87 
 
 
554 aa  47  0.0005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1485  response regulator receiver  37.1 
 
 
235 aa  46.6  0.0006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.236897  n/a   
 
 
-
 
NC_014158  Tpau_0406  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulfide oxidoreductase  30.22 
 
 
557 aa  46.6  0.0006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  29.82 
 
 
452 aa  46.6  0.0006  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  28.87 
 
 
446 aa  46.6  0.0006  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_009511  Swit_2977  response regulator receiver protein  36.36 
 
 
208 aa  46.6  0.0006  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.286368 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  34.25 
 
 
317 aa  46.6  0.0007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  47.27 
 
 
444 aa  46.2  0.0007  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  34.25 
 
 
317 aa  46.6  0.0007  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  37.88 
 
 
301 aa  46.6  0.0007  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0715  two component, sigma54 specific, Fis family transcriptional regulator  28 
 
 
442 aa  46.6  0.0007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0889351  normal  0.39603 
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  28.45 
 
 
459 aa  46.2  0.0008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  37.14 
 
 
303 aa  46.2  0.0008  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_010577  XfasM23_0399  response regulator receiver modulated metal dependent phosphohydrolase  27.21 
 
 
384 aa  46.2  0.0008  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4814  histidine kinase  35.06 
 
 
919 aa  46.2  0.0008  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.00150972  n/a   
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  47.27 
 
 
444 aa  45.4  0.001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  43.33 
 
 
298 aa  45.4  0.001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1670  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
394 aa  45.8  0.001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00261958  normal  0.184327 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  35.11 
 
 
479 aa  45.4  0.001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1287  multi-sensor signal transduction histidine kinase  34.29 
 
 
570 aa  45.8  0.001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  31.25 
 
 
214 aa  45.8  0.001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_009712  Mboo_0309  multi-sensor signal transduction histidine kinase  31.43 
 
 
657 aa  45.8  0.001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_010581  Bind_0185  two component, sigma54 specific, Fis family transcriptional regulator  33.63 
 
 
446 aa  45.8  0.001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.297369  normal 
 
 
-
 
NC_009831  Ssed_1974  two component transcriptional regulator, winged helix family protein  43.64 
 
 
223 aa  45.8  0.001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.667108 
 
 
-
 
NC_013525  Tter_1135  two component transcriptional regulator, winged helix family  43.1 
 
 
227 aa  45.8  0.001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  33.77 
 
 
304 aa  45.8  0.001  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008025  Dgeo_2096  multi-sensor signal transduction histidine kinase  28.95 
 
 
1140 aa  45.8  0.001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.166751  normal 
 
 
-
 
NC_009712  Mboo_1502  multi-sensor signal transduction histidine kinase  39.39 
 
 
783 aa  46.2  0.001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0445794 
 
 
-
 
NC_009712  Mboo_2366  multi-sensor signal transduction histidine kinase  32.58 
 
 
901 aa  45.4  0.001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.180969  normal 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  37.31 
 
 
331 aa  45.4  0.001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  37.31 
 
 
331 aa  45.4  0.001  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  41.82 
 
 
457 aa  45.8  0.001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  30.3 
 
 
455 aa  46.2  0.001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  28.93 
 
 
219 aa  45.4  0.001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0458  response regulator receiver protein  27.21 
 
 
384 aa  45.8  0.001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  39.62 
 
 
453 aa  45.1  0.002  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_012918  GM21_0360  response regulator receiver protein  29.23 
 
 
204 aa  45.1  0.002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000726536 
 
 
-
 
NC_014158  Tpau_0093  two component transcriptional regulator, winged helix family  35.48 
 
 
232 aa  44.7  0.002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  37.78 
 
 
450 aa  45.4  0.002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0692  response regulator receiver domain-containing protein  33 
 
 
390 aa  45.1  0.002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1435  two component, sigma54 specific, Fis family transcriptional regulator  40.62 
 
 
445 aa  45.4  0.002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0274365  n/a   
 
 
-
 
NC_007796  Mhun_0642  putative PAS/PAC sensor protein  40 
 
 
401 aa  45.1  0.002  Methanospirillum hungatei JF-1  Archaea  normal  0.201186  normal  0.0191068 
 
 
-
 
NC_009675  Anae109_1184  response regulator receiver modulated metal dependent phosphohydrolase  38.16 
 
 
394 aa  45.1  0.002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.185308 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  30.43 
 
 
445 aa  45.1  0.002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  29.9 
 
 
459 aa  45.1  0.002  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  29.9 
 
 
459 aa  45.1  0.002  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  32.14 
 
 
462 aa  44.7  0.002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  29.9 
 
 
459 aa  45.1  0.002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  37.5 
 
 
260 aa  45.1  0.002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  47.27 
 
 
444 aa  45.1  0.002  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_009439  Pmen_0938  response regulator receiver modulated diguanylate cyclase  27.54 
 
 
320 aa  45.1  0.002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.470671 
 
 
-
 
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