More than 300 homologs were found in PanDaTox collection
for query gene Rcas_1058 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_0413  ABC-type dipeptide transport system periplasmic component-like protein  93.26 
 
 
653 aa  1229    Roseiflexus sp. RS-1  Bacteria  normal  0.457116  normal 
 
 
-
 
NC_009767  Rcas_1058  ABC-type dipeptide transport system periplasmic component-like protein  100 
 
 
653 aa  1340    Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2361  ABC-type dipeptide transport system periplasmic component-like protein  69.71 
 
 
445 aa  619  1e-176  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0243915 
 
 
-
 
NC_009523  RoseRS_0354  ABC-type dipeptide transport system periplasmic component-like protein  56.13 
 
 
381 aa  235  2.0000000000000002e-60  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.180837 
 
 
-
 
NC_009523  RoseRS_0093  extracellular solute-binding protein  34.47 
 
 
604 aa  159  1e-37  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.503977 
 
 
-
 
NC_009972  Haur_3501  extracellular solute-binding protein  36.11 
 
 
639 aa  151  3e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000268642  n/a   
 
 
-
 
NC_011831  Cagg_2944  extracellular solute-binding protein family 5  33.46 
 
 
587 aa  140  4.999999999999999e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0305195 
 
 
-
 
NC_009767  Rcas_0197  extracellular solute-binding protein  33.21 
 
 
605 aa  139  2e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.386701  normal 
 
 
-
 
NC_009972  Haur_2657  extracellular solute-binding protein  33.6 
 
 
617 aa  138  4e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000297428  n/a   
 
 
-
 
NC_009972  Haur_3496  extracellular solute-binding protein  31.15 
 
 
590 aa  117  3.9999999999999997e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2258  solute-binding family 5 protein  31.8 
 
 
579 aa  113  9e-24  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2555  oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein  31.8 
 
 
580 aa  113  1.0000000000000001e-23  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0337  extracellular solute-binding protein family 5  29 
 
 
581 aa  105  3e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1563  extracellular solute-binding protein  29.1 
 
 
588 aa  101  4e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  0.176735  normal  0.279007 
 
 
-
 
NC_013161  Cyan8802_2321  extracellular solute-binding protein family 5  25.76 
 
 
580 aa  98.6  3e-19  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.815964 
 
 
-
 
NC_011726  PCC8801_2270  extracellular solute-binding protein family 5  25.76 
 
 
580 aa  98.6  3e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_3874  ABC transporter substrate binding protein (oligopeptide)  30.88 
 
 
585 aa  95.9  2e-18  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0872  extracellular solute-binding protein  28.57 
 
 
541 aa  94  8e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.00426332  n/a   
 
 
-
 
NC_008686  Pden_0608  extracellular solute-binding protein  30.34 
 
 
566 aa  84.3  0.000000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3875  ABC transporter substrate binding protein (oligopeptide)  27.41 
 
 
568 aa  83.2  0.00000000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7448  ABC-type dipeptide transport system periplasmic component-like protein  30.05 
 
 
626 aa  79.7  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.338891  normal 
 
 
-
 
NC_003909  BCE_0248  oligopeptide ABC transporter, oligopeptide-binding protein, putative  28.29 
 
 
575 aa  79.3  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0231  oligopeptide ABC transporter oligopeptide-binding protein  27.89 
 
 
555 aa  79  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0219  extracellular solute-binding protein  27.03 
 
 
575 aa  78.6  0.0000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0241  putative oligopeptide ABC transporter, oligopeptide-binding protein  27.89 
 
 
575 aa  79  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK0209  oligopeptide ABC transporter, oligopeptide-binding protein  27.89 
 
 
575 aa  78.2  0.0000000000004  Bacillus cereus E33L  Bacteria  normal  0.019765  n/a   
 
 
-
 
NC_005945  BAS0218  oligopeptide ABC transporter oligopeptide-binding protein  27.84 
 
 
559 aa  77.4  0.0000000000008  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0205  oligopeptide ABC transporter, oligopeptide-binding protein  25.78 
 
 
575 aa  75.9  0.000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1870  dipeptide transport protein  22.22 
 
 
540 aa  75.5  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0715  extracellular solute-binding protein  26.94 
 
 
565 aa  75.1  0.000000000004  Ruegeria sp. TM1040  Bacteria  normal  0.109389  normal 
 
 
-
 
NC_009523  RoseRS_2770  extracellular solute-binding protein  26.39 
 
 
603 aa  74.7  0.000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.14158  normal 
 
 
-
 
NC_009524  PsycPRwf_1526  extracellular solute-binding protein  27.51 
 
 
544 aa  74.3  0.000000000007  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013164  Apre_1771  extracellular solute-binding protein family 5  34.53 
 
 
547 aa  73.9  0.000000000008  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5370  extracellular solute-binding protein family 5  29.84 
 
 
629 aa  73.9  0.000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358498 
 
 
-
 
NC_011658  BCAH187_A0266  extracellular solute-binding protein family 5  25.38 
 
 
575 aa  73.6  0.00000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3566  dipeptide/oligopeptide-binding protein  27.98 
 
 
562 aa  73.2  0.00000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.672958  normal  0.0864129 
 
 
-
 
NC_011772  BCG9842_B5080  oligopeptide-binding protein OppA  25.78 
 
 
575 aa  72.8  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2644  extracellular solute-binding protein family 5  26.78 
 
 
533 aa  72.4  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.0361873  n/a   
 
 
-
 
NC_008609  Ppro_2655  extracellular solute-binding protein  24.86 
 
 
539 aa  72.8  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000125789  n/a   
 
 
-
 
NC_012918  GM21_1590  extracellular solute-binding protein family 5  27.07 
 
 
534 aa  72.8  0.00000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A0245  oligopeptide-binding protein OppA  25.78 
 
 
575 aa  72.8  0.00000000002  Bacillus cereus B4264  Bacteria  normal  0.0551474  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0208  extracellular solute-binding protein  25.78 
 
 
575 aa  72  0.00000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4611  extracellular solute-binding protein family 5  25.79 
 
 
553 aa  72.4  0.00000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.596915 
 
 
-
 
NC_013171  Apre_0689  extracellular solute-binding protein family 5  33.81 
 
 
544 aa  71.6  0.00000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0785  extracellular solute-binding protein family 5  28.74 
 
 
600 aa  70.9  0.00000000008  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2203  extracellular solute-binding protein family 5  24.1 
 
 
531 aa  70.5  0.00000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0247328 
 
 
-
 
NC_011988  Avi_5299  ABC transporter substrate binding protein (oligopeptide)  23.23 
 
 
556 aa  69.7  0.0000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01870  hypothetical protein  25.86 
 
 
539 aa  70.5  0.0000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_0759  extracellular solute-binding protein  28.32 
 
 
547 aa  69.7  0.0000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0395598 
 
 
-
 
NC_008009  Acid345_1988  ABC peptide transporter, periplasmic ligand binding protein  28.38 
 
 
505 aa  70.5  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.693495  normal  0.584075 
 
 
-
 
NC_013171  Apre_0387  extracellular solute-binding protein family 5  27.78 
 
 
503 aa  70.1  0.0000000001  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000000219856  n/a   
 
 
-
 
NC_007802  Jann_3294  extracellular solute-binding protein  26.59 
 
 
573 aa  68.9  0.0000000002  Jannaschia sp. CCS1  Bacteria  normal  normal  0.207016 
 
 
-
 
NC_007947  Mfla_1483  extracellular solute-binding protein  25.56 
 
 
551 aa  69.3  0.0000000002  Methylobacillus flagellatus KT  Bacteria  normal  0.228319  normal  0.152124 
 
 
-
 
NC_011831  Cagg_1410  extracellular solute-binding protein family 5  27.88 
 
 
615 aa  69.7  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0910  extracellular solute-binding protein  25.91 
 
 
555 aa  69.7  0.0000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.463169  n/a   
 
 
-
 
NC_010718  Nther_0477  extracellular solute-binding protein family 5  23.4 
 
 
573 aa  68.9  0.0000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A1979  oligopeptide ABC transporter, solute-binding protein  25.99 
 
 
516 aa  68.6  0.0000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_011769  DvMF_0788  extracellular solute-binding protein family 5  25.38 
 
 
576 aa  68.6  0.0000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.301156 
 
 
-
 
NC_010505  Mrad2831_4579  extracellular solute-binding protein  30 
 
 
596 aa  68.2  0.0000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0273  nickel ABC transporter, periplasmic nickel-binding protein  25.74 
 
 
525 aa  68.6  0.0000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2798  extracellular solute-binding protein family 5  23.35 
 
 
557 aa  67.8  0.0000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1234  extracellular solute-binding protein  24.72 
 
 
538 aa  67.8  0.0000000006  Geobacter metallireducens GS-15  Bacteria  normal  0.871598  normal  0.318753 
 
 
-
 
NC_002939  GSU1433  peptide ABC transporter, periplasmic peptide-binding protein  25.91 
 
 
538 aa  67.8  0.0000000007  Geobacter sulfurreducens PCA  Bacteria  normal  0.948157  n/a   
 
 
-
 
NC_014212  Mesil_2731  extracellular solute-binding protein family 5  26.27 
 
 
622 aa  67.4  0.0000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1768  extracellular solute-binding protein family 5  30.77 
 
 
579 aa  67.4  0.0000000008  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000449992  n/a   
 
 
-
 
NC_009972  Haur_4683  extracellular solute-binding protein  29.06 
 
 
564 aa  67  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3950  dipeptide ABC transporter periplasmic dipeptide-binding protein  28.97 
 
 
526 aa  66.6  0.000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3906  dipeptide ABC transporter periplasmic dipeptide-binding protein  28.97 
 
 
526 aa  66.6  0.000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.938997 
 
 
-
 
NC_011149  SeAg_B3842  dipeptide ABC transporter, periplasmic dipeptide-binding protein  28.97 
 
 
526 aa  66.6  0.000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0324  extracellular solute-binding protein  25.32 
 
 
586 aa  66.6  0.000000001  Deinococcus geothermalis DSM 11300  Bacteria  unclonable  0.000000261589  hitchhiker  0.0038707 
 
 
-
 
NC_009485  BBta_4859  putative ABC transporter, substrate-binding protein  25.68 
 
 
532 aa  66.6  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.176928  normal  0.590645 
 
 
-
 
NC_009707  JJD26997_1935  peptide ABC transporter, periplasmic peptide-binding protein  25.95 
 
 
511 aa  66.2  0.000000002  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0398  oligopeptide/dipeptide ABC transporter, periplasmic peptide-binding protein  27.78 
 
 
527 aa  65.9  0.000000002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0077  extracellular solute-binding protein family 5  27.03 
 
 
501 aa  66.2  0.000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4831  putative ABC transporter (substrate-binding protein)  28.12 
 
 
527 aa  66.2  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.153883  normal  0.947205 
 
 
-
 
NC_007484  Noc_1344  extracellular solute-binding protein  23.72 
 
 
506 aa  65.9  0.000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.088373  n/a   
 
 
-
 
NC_011658  BCAH187_A0265  oligopeptide-binding protein OppA  25.82 
 
 
566 aa  65.5  0.000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_58390  putative binding protein component of ABC transpor  26.44 
 
 
533 aa  65.5  0.000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_1569  peptide ABC transporter, periplasmic peptide-binding protein  25.68 
 
 
511 aa  65.5  0.000000003  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0247  oligopeptide ABC transporter, substrate-binding protein, putative  25.41 
 
 
567 aa  65.1  0.000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.460021  n/a   
 
 
-
 
NC_011205  SeD_A4010  dipeptide ABC transporter periplasmic dipeptide-binding protein  28.57 
 
 
526 aa  65.1  0.000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0631  extracellular solute-binding protein family 5  26.29 
 
 
631 aa  65.1  0.000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.00116155  normal  0.250691 
 
 
-
 
NC_009523  RoseRS_4599  extracellular solute-binding protein  27.38 
 
 
621 aa  64.7  0.000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.593059  normal 
 
 
-
 
NC_009654  Mmwyl1_0114  extracellular solute-binding protein  25.2 
 
 
530 aa  64.7  0.000000006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3828  dipeptide ABC transporter periplasmic dipeptide-binding protein  28.57 
 
 
526 aa  64.7  0.000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.808847  normal 
 
 
-
 
NC_007778  RPB_1651  extracellular solute-binding protein  27.51 
 
 
516 aa  64.3  0.000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7214  ABC transporter substrate binding protein (oligopeptide)  29.73 
 
 
532 aa  64.3  0.000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1145  extracellular solute-binding protein  23.46 
 
 
565 aa  64.3  0.000000006  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00838015  normal  0.546746 
 
 
-
 
NC_010184  BcerKBAB4_0207  extracellular solute-binding protein  26.25 
 
 
567 aa  64.3  0.000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4559  dipeptide ABC transporter, periplasmic dipeptide-binding protein  25.71 
 
 
530 aa  64.3  0.000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5114  ABC transporter periplasmic binding protein  26.05 
 
 
533 aa  64.3  0.000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2277  extracellular solute-binding protein family 5  24.62 
 
 
615 aa  64.3  0.000000008  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00527261  decreased coverage  0.000000000210766 
 
 
-
 
NC_007005  Psyr_4236  extracellular solute-binding protein  26.29 
 
 
530 aa  63.9  0.000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.978762  normal 
 
 
-
 
NC_009485  BBta_2585  putative ABC transporter, substrate binding subunit  23.48 
 
 
520 aa  63.2  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0598963 
 
 
-
 
NC_007492  Pfl01_0816  extracellular solute-binding protein  25.21 
 
 
533 aa  63.5  0.00000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1356  extracellular solute-binding protein family 5  27.45 
 
 
596 aa  63.2  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2311  extracellular solute-binding protein family 5  21.01 
 
 
562 aa  63.5  0.00000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.34367  normal  0.0804809 
 
 
-
 
NC_012880  Dd703_1189  extracellular solute-binding protein family 5  24.73 
 
 
497 aa  63.5  0.00000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0049  extracellular solute-binding protein family 5  28.96 
 
 
535 aa  63.5  0.00000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.46848  n/a   
 
 
-
 
NC_010511  M446_0892  extracellular solute-binding protein  27.82 
 
 
596 aa  63.5  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  0.353929  normal 
 
 
-
 
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