Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4236 |
Symbol | |
ID | 3369776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 5046719 |
End bp | 5048311 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637654596 |
Product | extracellular solute-binding protein |
Protein accession | YP_237304 |
Protein GI | 66047463 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.978762 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTAAAA CTCTTGCGAT GACGTCGTGC CTGGGACTGT TGGCACTGGC CCCGTTTGCC CAGGCGGCAA GCAATCTGGT GTTTTGCTCC GAAGCGAGCC CGGCTGGCTT CGACGGTGCT CAATACACTT CCTCCACCGA TAACGATGCA TCCGAGCCGA TCTACAATCG ACTCACCGAA TTCAAGCAAG GCGATACCAC CGTGGTTCCA GCGCTGGCGA CTTCCTGGGA CACCTCGGAA GACGGCCTGG TCTACACGTT TCATCTGCGC GAGGGCGTGA AGTTCCACAG CAACAAGAAC TTCAAGCCCA GCCGTGACTT CAACGCCGAC GACGTGCTGT TCACCTTCAA TCGCATGCTC AAGCCCGATC ATCCGTTCCG TGTCGCTTAC CCGACCGAGT TCCCCTACTT CACCGGCATG GGCCTGAACA AGAAGATCAA GTCCGTCGAG AAGACCGACC CGCTGACCGT CGTCTTCACC CTCAATACGG TCGATGCGGC ATTCATCCAG AACATCGCGA TGAACTTCGC CGGCATTCTC TCCGCCGAGT ACGCCGAACA GCTGATGGCC AAGGGCGACG TGCGCGACAT CAATCAGCAG CCTATCGGTA CAGGGCCGTT CGTGTTTCAG CGCTATCAGA AGGATTCGCA GATTCGCTAC AAGGGCAACA AGGAATTCTG GGACCCGAGC CGGGTGAAAA TCGACCAGTT GATCTTCGCC ATCGTGACCG ACGCCTCCGC GCGCATGCAA AAGCTCAAGG CCAACGAATG CCAGGTCTCG GTCAACCCGC GTCCGGCGGA CCTCGCCAGC CTCAAGGCAG ACAAAAGCCT GCAGGTCATC GAGAAGCCAG GCTTCAACCT CGGCTACATC TCTTACAACG TGCGCCACGA ACCGCTGGGC AAGCTGCAAG TCCGTCAGGC GCTGGACATG GCCGTCAACA AAAAGGCGAT CATCAACGCG GTTTATCAGG GCGCGGGGCA ACTGGCAGTC AACGCCATGC CACCGACCCA GTGGTCCTAT GACGACAGCA TCAAGGACGC CCCCTACGAC CCGGAAAAAG CCAGGACCCT GTTGCGTGCC GCTGGCGTCA AGGAAGGCAC GGAACTAACC CTGTGGGCCA TGCCGGTTCA GCGTCCGTAC AACCCCAACG CCAAACTGAT GGCTGAAATG CTTCAGGCCG ACTGGGCCAA GGTCGGTATC AAGGTCAAGA TCGTCAGTTA CGAATGGGGT GAATACCTCA AACGCACCAA AAACGGCGAG CACGATATCT CGCTGATCGG CTGGACCGGC GACAACGGTG ACCCGGACAA CTGGCTGGGC ACGCTTTACA GCTGCGACGC GATTGGCGGC AACAACTATT CGATGTGGTG CGACAAGAAA TACGACGACC TGATCAAGGA CGCGGTTGCG ACCACTGACC GCGTGAAGCG TACCGAACTG TACCAACGGG CGCAGCGCTA CCTGAAGGAG CAGGTGCCGA TCACACCGAT TGCCCACTCG ACCGTCAATC AGCCATTGCG CGCCGAGGTC AGGGACTTCC ACGTCAGCCC GTTCGGTCGC AACAACTTTT CAGGCGTCAG CATCGTCGAT TGA
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Protein sequence | MRKTLAMTSC LGLLALAPFA QAASNLVFCS EASPAGFDGA QYTSSTDNDA SEPIYNRLTE FKQGDTTVVP ALATSWDTSE DGLVYTFHLR EGVKFHSNKN FKPSRDFNAD DVLFTFNRML KPDHPFRVAY PTEFPYFTGM GLNKKIKSVE KTDPLTVVFT LNTVDAAFIQ NIAMNFAGIL SAEYAEQLMA KGDVRDINQQ PIGTGPFVFQ RYQKDSQIRY KGNKEFWDPS RVKIDQLIFA IVTDASARMQ KLKANECQVS VNPRPADLAS LKADKSLQVI EKPGFNLGYI SYNVRHEPLG KLQVRQALDM AVNKKAIINA VYQGAGQLAV NAMPPTQWSY DDSIKDAPYD PEKARTLLRA AGVKEGTELT LWAMPVQRPY NPNAKLMAEM LQADWAKVGI KVKIVSYEWG EYLKRTKNGE HDISLIGWTG DNGDPDNWLG TLYSCDAIGG NNYSMWCDKK YDDLIKDAVA TTDRVKRTEL YQRAQRYLKE QVPITPIAHS TVNQPLRAEV RDFHVSPFGR NNFSGVSIVD
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