Gene Avi_5299 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5299 
Symbol 
ID7380665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp301451 
End bp303121 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content58% 
IMG OID643648927 
ProductABC transporter substrate binding protein (oligopeptide) 
Protein accessionYP_002547164 
Protein GI222106373 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGATA AGGAACGCAA TTCGATACCG CATCCCACGC GTCGCCAGAC GCTTGGCCTC 
ATGGCGCTTG GAGCGTCCGG CGTGCTTCTC TCGGGGCTGC CAATCTCGGA GATTCGCGCG
GCCAGTGCCG CGACCAAATC GATCAAGGGA CAGCTGACTG TCGGCTTTTC CCAGGAGCCG
ACGGTTTTCA ATCCGCATAT GCCTCATATC GAAGTGGATG AAGGCATTCA TTTCAGCATA
TTCGATACGC TGTTCAGCGT TGATGCCGCC GGCAAATTCG TTCCGGGGCT GGCCGTGGAC
GTCCCGAGCG TCGAAAACGG CGGCATCTCA GCCGATGGCC TGAAGTGGAA GATCAAGCTG
CGCGATGGCG TGACATGGCA TGACGGCAAG CCGTTCACCG CTGAAGACGT CAAGGCAACG
CTCGAACTGC TGGTCGATGC CAATTTCCGC AGCTGGCGTA AAACCGGCCA TGAATTCGTC
CGTGACCTGA CCGTTGTTTC TCCCACGGAA ATCACCTGGC GGATGGACAA GCCCTTCGCG
CCCTATCCTT CCATTCTGGC CTCGACCTTC ATCACGCCGA AACATCTTCT GTCGGCCAGC
GCCGATCCGA ACAATGCGCC GTTCAACACC GCGCCGGTTG GCACCGGTCC GTTCAAATGG
GCTGAGCGGG TCGCCGGAGA CCATATCCTG CTGGCTGCCA ACCCGGATTA TTTTGGTGAC
GGCCCCTATG TCGAAAAGCT GATTTACAAA TACGTTCCCG ATCTGAATGT CATGTACACC
CAGTTCAAGA CGGGCGATAT TGATGTGGTC GGGTTGCAGT GGATCACGCC CGATCACTAC
GAGGAAGCCA AGGGGCTGGA CGGCAAGGTG GTCAATGTGG TGCCGGGTTC GACGGTTGAA
TCCTTCACCT TCAACATGGA GCGCCCACAG TTCAAGGAAG CGGCGGTGCG CGAGGCTCTG
TATGCCGCCA TCGACAAGCA GTCGATTATC GAAGCGCTCT ATTACGGCCT GCCGACCCCC
ACCGAAAGCT ATGTGCCGCA GCAATCCTTC TACTTCAATC CTGACCTGCC GAAGCATGAA
TATGACATCG CCAAGGCCAA GAAGCTGCTG GATGATGCCG GCTGGGTGGC TGGTAGCGAC
GGCATTCGCG CCAAGGGTGG GGTTAAACTG TCCTTCACCT GCTCAACGAC GGCGGGCAAC
CATATCCGCG AACAGGTCCA GCAATTCCTG CAACAGTCCT TCAAGGATAT CGGGGTGGAA
ATGACCATTT CCAACCTGCC GCCAGCGGTG ATGTGGGGCG ATTATTGGAC GCTGTCGAAG
TTCGACGCCG TCATCGTTGG CCTGGATTTC CTGACGGGGT CCGATCCCGA CACTTCCAAT
TTCTTCCGTT CTACGGCGAT CCCGGCCAAG GGCGGTTCCG GCCAGAACAC CTGGCAGTTT
TCCAACCAGC AAGTAGACGA GCTGCTCACC AAGGGCGGCG AGCTGTTCGT ACCGGAGGAG
CGCAAGGCCG TCTACCTGAA GATCCAGGAG ATCATGCGCA AGGAACTGCC GCTCCTGCCA
ATGTTCCAGT ATGCGACCGT GCGCGGCCAC AAGCAGGGCG TCGAGAACGT GACGCCCAAC
GTGAATGTGC GTATCGACAC CTGGAACGTC GCCACCTGGC GCTGGGCCTG A
 
Protein sequence
MSDKERNSIP HPTRRQTLGL MALGASGVLL SGLPISEIRA ASAATKSIKG QLTVGFSQEP 
TVFNPHMPHI EVDEGIHFSI FDTLFSVDAA GKFVPGLAVD VPSVENGGIS ADGLKWKIKL
RDGVTWHDGK PFTAEDVKAT LELLVDANFR SWRKTGHEFV RDLTVVSPTE ITWRMDKPFA
PYPSILASTF ITPKHLLSAS ADPNNAPFNT APVGTGPFKW AERVAGDHIL LAANPDYFGD
GPYVEKLIYK YVPDLNVMYT QFKTGDIDVV GLQWITPDHY EEAKGLDGKV VNVVPGSTVE
SFTFNMERPQ FKEAAVREAL YAAIDKQSII EALYYGLPTP TESYVPQQSF YFNPDLPKHE
YDIAKAKKLL DDAGWVAGSD GIRAKGGVKL SFTCSTTAGN HIREQVQQFL QQSFKDIGVE
MTISNLPPAV MWGDYWTLSK FDAVIVGLDF LTGSDPDTSN FFRSTAIPAK GGSGQNTWQF
SNQQVDELLT KGGELFVPEE RKAVYLKIQE IMRKELPLLP MFQYATVRGH KQGVENVTPN
VNVRIDTWNV ATWRWA