| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5114 |
|---|
| Symbol | |
|---|
| ID | 5358547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 5261752 |
|---|
| End bp | 5263353 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640814160 |
|---|
| Product | ABC transporter periplasmic binding protein |
|---|
| Protein accession | YP_001350450 |
|---|
| Protein GI | 152985170 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGA TCCTTCCCGT TCGGGCCTGG CTGGCAGCCG GTCTGATCCT CGGCACCCCG
TTCTCCCACG CCGCCAGCAA CCTGGTGTTC TGCTCGGAGG GCAGCCCGGC CGGTTTCGAT
CCCGCCCAGT ACACCACCGG TACCGATTAC GACGCGACCT CGGTCACCCT GTTCAACCGC
CTCGTCCAGT TCGAACGCGG CGGCACCCGG GCGATCCCCG GCCTGGCGGA GAGCTGGGAC
ATCGGCGACG ACGGCAAGAC CTACACCTTC CACCTGCGCA AGGGCGTGAA GTTCCACAGC
ACCGACTACT TCAAGCCGAC CCGCGAGTTC GACGCCGACG ACGTGCTGTT CACCTTCCAG
CGCATGCTCG ACAAGAACCA TCCGTTCAGG AAGGCCTACC CCACCGAGTT CCCCTACTTC
ACCGACATGG GCCTGGACAA GAACATCGCC AGGGTCGAGA AGCTCGACGA GCACACGGTG
AAGTTCACCC TCAACGAGGT CGACGCCGCC TTCATCCAGA ACCTGGCGAT GGACGTCGCT
TCGATCCAGT CCGCCGAATA CGCCGGGCAG TTGCTAGAGG CCGGCAAGCC GCAGCAGATC
AACCAGAAGC CGATCGGTAC CGGACCCTTC ATTCTCAGTC GCTACCAGAA GGACGCGCAG
ATCCGCTTCA AGGGCAACAA GGACTACTGG AAGCCGGAAG ACGTGAAGAT CGATAACCTG
ATCTTCGCCA TCAATACCGA CGCCGCCGTG CGCGCGCAGA AACTCAAGGC CGGCGAGTGC
CAGATCACCC TCAACCCGCG CCCCGCCGAC CTCAAGGCCC TGCAGGAAGC GGCGAACCTG
AAGGTGCCGT CGCAACCGGG CTTCAACCTC GGCTACATCG CCTACAACGT CACCCACAAG
CCGTTCGACC AGTTGGAAGT GCGTCAGGCG CTGGACATGG CGGTGAATAA ACAGGCGATC
ATCGATGCCG TCTACCAGGG CGCCGGGCAA CTGGCCGTGA ACGGCATGCC GCCGACCCAG
TGGTCCTACG ACGAGACCAT CAAGGACGCC CCGTTCGATC CAGCCAAGGC CCGCGAACTG
CTGAAGAAGG CCGGCGTCGC CGAAGGCACC GAGATCACCC TCTGGGCCAT GCCGGTACAG
CGTCCCTACA ACCCCAACGC CAAGCTGATG GCCGAGATGA TCCAGGCCGA CTGGGCGAAG
ATCGGCATCA AGGCCAGGAT CGTCAGCTAC GAATGGGGCG AGTACATCAA GCGCGCCCAC
GCCGGCGAGC ACGACGCCAT GCTGTTCGGC TGGACCGGCG ACAACGGCGA CCCGGACAAC
TGGCTGGCGA CCCTCTATGG CTGCGACTCG ATCAACGGCA ACAACGTCTC CAAATGGTGC
GACGCCGGCT ACGACAAGCT GGTCAAGGAA GCCAAGCGGG TCACCGACCA GGACAAGCGC
AGCGAGCTGT ACAAGCAGGC CCAGCACATC CTCAAGGAGC AGGTGCCGAT CACCCCGATC
GCCCACTCCA CCGTCTACCA GCCGATGAGC AAGTCGGTCC ACGGCTTCAA GATCAGTCCC
TTCTCGCGGA ACGCCTTCTA TGGCGTAGCC AACCAGCCCT GA
|
|---|
| Protein sequence | MRKILPVRAW LAAGLILGTP FSHAASNLVF CSEGSPAGFD PAQYTTGTDY DATSVTLFNR
LVQFERGGTR AIPGLAESWD IGDDGKTYTF HLRKGVKFHS TDYFKPTREF DADDVLFTFQ
RMLDKNHPFR KAYPTEFPYF TDMGLDKNIA RVEKLDEHTV KFTLNEVDAA FIQNLAMDVA
SIQSAEYAGQ LLEAGKPQQI NQKPIGTGPF ILSRYQKDAQ IRFKGNKDYW KPEDVKIDNL
IFAINTDAAV RAQKLKAGEC QITLNPRPAD LKALQEAANL KVPSQPGFNL GYIAYNVTHK
PFDQLEVRQA LDMAVNKQAI IDAVYQGAGQ LAVNGMPPTQ WSYDETIKDA PFDPAKAREL
LKKAGVAEGT EITLWAMPVQ RPYNPNAKLM AEMIQADWAK IGIKARIVSY EWGEYIKRAH
AGEHDAMLFG WTGDNGDPDN WLATLYGCDS INGNNVSKWC DAGYDKLVKE AKRVTDQDKR
SELYKQAQHI LKEQVPITPI AHSTVYQPMS KSVHGFKISP FSRNAFYGVA NQP
|
|---|
| |