More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1285 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013037  Dfer_1285  two component transcriptional regulator, LuxR family  100 
 
 		 209 aa  424  1e-118  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0996283  normal  0.344284 
 
 
-
 
NC_013037  Dfer_1284  two component transcriptional regulator, LuxR family  36.54 
 
 		 209 aa  148  4e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.108206  normal  0.346883 
 
 
-
 
NC_013037  Dfer_1286  two component transcriptional regulator, LuxR family  35.61 
 
 		 215 aa  130  2.0000000000000002e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.13459  normal  0.233078 
 
 
-
 
NC_013037  Dfer_4796  two component transcriptional regulator, LuxR family  36.41 
 
 		 206 aa  129  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  hitchhiker  0.00878953 
 
 
-
 
NC_013132  Cpin_4114  two component transcriptional regulator, LuxR family  33.65 
 
 		 208 aa  126  2.0000000000000002e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0576718  normal  0.109105 
 
 
-
 
NC_013037  Dfer_2335  two component transcriptional regulator, LuxR family  32.85 
 
 		 209 aa  123  2e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.938318  normal  1 
 
 
-
 
NC_013037  Dfer_2086  two component transcriptional regulator, LuxR family  30.24 
 
 		 220 aa  121  8e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.963114 
 
 
-
 
NC_013037  Dfer_5301  two component transcriptional regulator, LuxR family  32.37 
 
 		 212 aa  116  1.9999999999999998e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0298564 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  29.56 
 
 		 235 aa  99  5e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013037  Dfer_1662  two component transcriptional regulator, LuxR family  28.8 
 
 		 199 aa  98.2  7e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.214082  normal  0.496902 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  31.28 
 
 		 210 aa  92.8  4e-18  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.0301144 
 
 
-
 
NC_013037  Dfer_1276  two component transcriptional regulator, LuxR family  28.21 
 
 		 209 aa  92  6e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.161375  normal  0.335829 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  28.08 
 
 		 211 aa  91.3  1e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  27.09 
 
 		 220 aa  89.4  3e-17  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  29.9 
 
 		 215 aa  87.4  1e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  30.61 
 
 		 215 aa  87  2e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  30.61 
 
 		 215 aa  87  2e-16  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  30.61 
 
 		 215 aa  87  2e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  27.32 
 
 		 214 aa  87  2e-16  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010524  Lcho_1400  two component LuxR family transcriptional regulator  26.5 
 
 		 205 aa  86.7  2e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  29.9 
 
 		 216 aa  86.3  3e-16  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  29.59 
 
 		 215 aa  85.5  6e-16  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  28.93 
 
 		 218 aa  85.1  8e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  29.56 
 
 		 216 aa  84.3  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  83.6  0.000000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  28.57 
 
 		 214 aa  83.6  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  26.37 
 
 		 215 aa  84  0.000000000000002  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  83.6  0.000000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  26.67 
 
 		 215 aa  83.2  0.000000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_007974  Rmet_5714  two component LuxR family transcriptional regulator  27.54 
 
 		 210 aa  82.8  0.000000000000003  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  29.23 
 
 		 216 aa  82.8  0.000000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_4322  two component LuxR family transcriptional regulator  28.08 
 
 		 207 aa  82.8  0.000000000000003  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  28.08 
 
 		 217 aa  83.2  0.000000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  82.8  0.000000000000004  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  82.4  0.000000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_011662  Tmz1t_0180  two component transcriptional regulator, LuxR family  27.08 
 
 		 213 aa  82  0.000000000000006  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  82  0.000000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  82  0.000000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_011094  SeSA_A2472  transcriptional regulator NarP  31.37 
 
 		 215 aa  81.6  0.000000000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  81.6  0.000000000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_010084  Bmul_3052  two component LuxR family transcriptional regulator  29 
 
 		 218 aa  81.6  0.000000000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317078  normal  1 
 
 
-
 
NC_011149  SeAg_B2381  transcriptional regulator NarP  31.37 
 
 		 215 aa  81.6  0.000000000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_010623  Bphy_4335  two component LuxR family transcriptional regulator  27.5 
 
 		 194 aa  81.6  0.000000000000008  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_5940  LuxR family response regulator  28.02 
 
 		 220 aa  81.3  0.000000000000009  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000000781929  normal  1 
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  28.08 
 
 		 215 aa  81.3  0.000000000000009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.118405 
 
 
-
 
NC_009455  DehaBAV1_0849  two component LuxR family transcriptional regulator  28.5 
 
 		 209 aa  80.9  0.00000000000001  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B4470  two component LuxR family transcriptional regulator  29.41 
 
 		 232 aa  81.3  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.370568  n/a   
 
 
-
 
NC_011205  SeD_A2589  transcriptional regulator NarP  31.37 
 
 		 215 aa  81.3  0.00000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.167087 
 
 
-
 
NC_009438  Sputcn32_0304  two component LuxR family transcriptional regulator  31.34 
 
 		 207 aa  80.9  0.00000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_2966  two component LuxR family transcriptional regulator  28 
 
 		 218 aa  80.9  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  0.288922 
 
 
-
 
NC_011080  SNSL254_A2430  transcriptional regulator NarP  31.37 
 
 		 215 aa  81.3  0.00000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.426027  normal  0.504703 
 
 
-
 
NC_011083  SeHA_C2486  transcriptional regulator NarP  31.37 
 
 		 215 aa  81.3  0.00000000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.187807  normal  0.0115945 
 
 
-
 
NC_009783  VIBHAR_02748  response regulator  24.38 
 
 		 214 aa  80.9  0.00000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  28.57 
 
 		 215 aa  80.1  0.00000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_007948  Bpro_0293  two component LuxR family transcriptional regulator  30.43 
 
 		 222 aa  80.5  0.00000000000002  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  28.08 
 
 		 214 aa  80.5  0.00000000000002  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  27.41 
 
 		 218 aa  80.5  0.00000000000002  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.705126 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  28.22 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  28.06 
 
 		 215 aa  80.1  0.00000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  25.12 
 
 		 210 aa  80.1  0.00000000000002  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  29.53 
 
 		 210 aa  80.5  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.458284 
 
 
-
 
NC_002947  PP_1090  LuxR family DNA-binding response regulator  27.59 
 
 		 207 aa  79.7  0.00000000000003  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  29.41 
 
 		 209 aa  79.7  0.00000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007204  Psyc_0703  LuxR family transcriptional regulator  27.36 
 
 		 211 aa  79.7  0.00000000000003  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.000151408  normal  1 
 
 
-
 
NC_009512  Pput_1131  two component LuxR family transcriptional regulator  27.59 
 
 		 236 aa  79.7  0.00000000000003  Pseudomonas putida F1  Bacteria  normal  0.796271  normal  0.799889 
 
 
-
 
NC_007510  Bcep18194_A6403  two component LuxR family transcriptional regulator  28.36 
 
 		 271 aa  79.7  0.00000000000003  Burkholderia sp. 383  Bacteria  normal  1  normal  0.285313 
 
 
-
 
NC_009052  Sbal_2562  response regulator  24.88 
 
 		 214 aa  79.3  0.00000000000004  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
NC_009665  Shew185_2600  response regulator  24.88 
 
 		 214 aa  79.3  0.00000000000004  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  25.25 
 
 		 213 aa  79.3  0.00000000000004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  26.73 
 
 		 214 aa  79.3  0.00000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_009997  Sbal195_2677  response regulator  24.88 
 
 		 214 aa  79.3  0.00000000000004  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_014230  CA2559_06590  DNA-binding response regulator, LuxR family protein  25.59 
 
 		 210 aa  79.3  0.00000000000004  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  28.57 
 
 		 210 aa  79.3  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  28.57 
 
 		 210 aa  79.3  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_1782  response regulator  24.88 
 
 		 214 aa  79.3  0.00000000000004  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_008390  Bamb_3100  two component LuxR family transcriptional regulator  27.5 
 
 		 218 aa  79.3  0.00000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.650822  n/a   
 
 
-
 
NC_007969  Pcryo_0677  two component LuxR family transcriptional regulator  26.87 
 
 		 211 aa  79  0.00000000000005  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.00533706  normal  1 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  27.69 
 
 		 215 aa  79  0.00000000000005  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal  1 
 
 
-
 
NC_010087  Bmul_5766  two component LuxR family transcriptional regulator  24.75 
 
 		 212 aa  79  0.00000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.918691  normal  1 
 
 
-
 
NC_013037  Dfer_0608  two component transcriptional regulator, LuxR family  24.5 
 
 		 209 aa  78.6  0.00000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.631365  normal  1 
 
 
-
 
NC_013173  Dbac_1038  two component transcriptional regulator, LuxR family  27.5 
 
 		 215 aa  78.6  0.00000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.942109  n/a   
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  26.17 
 
 		 274 aa  78.2  0.00000000000007  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  27.23 
 
 		 210 aa  78.6  0.00000000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_012560  Avin_17330  Two-component response regulator, LuxR family  26.57 
 
 		 211 aa  78.6  0.00000000000007  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  25.12 
 
 		 210 aa  78.6  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2649  response regulator  24.14 
 
 		 214 aa  78.2  0.00000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_4250  two component LuxR family transcriptional regulator  28.44 
 
 		 246 aa  78.6  0.00000000000007  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.59923 
 
 
-
 
NC_011901  Tgr7_1909  response regulator receiver protein  25.37 
 
 		 220 aa  78.2  0.00000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.631594  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000008  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_011353  ECH74115_3330  transcriptional regulator NarP  29.81 
 
 		 215 aa  78.2  0.00000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000009  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000009  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000009  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000009  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_1639  response regulator  23.88 
 
 		 226 aa  78.2  0.00000000000009  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00137195  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  25.37 
 
 		 215 aa  78.2  0.00000000000009  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_3391  LuxR family DNA-binding response regulator  27 
 
 		 218 aa  77.8  0.0000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_0425  LuxR family DNA-binding response regulator  27 
 
 		 218 aa  77.8  0.0000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0536791  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  25.25 
 
 		 215 aa  77.8  0.0000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2955  LuxR family DNA-binding response regulator  27 
 
 		 218 aa  77.8  0.0000000000001  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
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