More than 300 homologs were found in PanDaTox collection
for query gene Dfer_4796 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013037  Dfer_4796  two component transcriptional regulator, LuxR family  100 
 
 		 206 aa  416  9.999999999999999e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  hitchhiker  0.00878953 
 
 
-
 
NC_013132  Cpin_4114  two component transcriptional regulator, LuxR family  49.03 
 
 		 208 aa  201  6e-51  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0576718  normal  0.109105 
 
 
-
 
NC_013037  Dfer_2086  two component transcriptional regulator, LuxR family  43.69 
 
 		 220 aa  176  2e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.963114 
 
 
-
 
NC_013037  Dfer_1284  two component transcriptional regulator, LuxR family  42.86 
 
 		 209 aa  174  7e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.108206  normal  0.346883 
 
 
-
 
NC_013037  Dfer_1286  two component transcriptional regulator, LuxR family  42.23 
 
 		 215 aa  169  2e-41  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.13459  normal  0.233078 
 
 
-
 
NC_013037  Dfer_2335  two component transcriptional regulator, LuxR family  42.65 
 
 		 209 aa  160  8.000000000000001e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.938318  normal  1 
 
 
-
 
NC_013037  Dfer_5301  two component transcriptional regulator, LuxR family  39.61 
 
 		 212 aa  157  1e-37  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0298564 
 
 
-
 
NC_013037  Dfer_0608  two component transcriptional regulator, LuxR family  37.06 
 
 		 209 aa  134  9.999999999999999e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.631365  normal  1 
 
 
-
 
NC_013037  Dfer_1662  two component transcriptional regulator, LuxR family  35.75 
 
 		 199 aa  131  6.999999999999999e-30  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.214082  normal  0.496902 
 
 
-
 
NC_013037  Dfer_1276  two component transcriptional regulator, LuxR family  35.15 
 
 		 209 aa  129  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.161375  normal  0.335829 
 
 
-
 
NC_013037  Dfer_1285  two component transcriptional regulator, LuxR family  36.41 
 
 		 209 aa  129  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0996283  normal  0.344284 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  34.16 
 
 		 216 aa  126  3e-28  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  33.66 
 
 		 216 aa  123  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_5755  two component transcriptional regulator, LuxR family  35.44 
 
 		 202 aa  123  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.15816  normal  0.181841 
 
 
-
 
NC_007404  Tbd_2237  two component LuxR family transcriptional regulator  33.5 
 
 		 211 aa  121  7e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  30.2 
 
 		 210 aa  121  8e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  33.33 
 
 		 210 aa  119  3e-26  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  33.33 
 
 		 210 aa  119  3e-26  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  33.17 
 
 		 219 aa  119  3.9999999999999996e-26  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  34.17 
 
 		 215 aa  119  3.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_010002  Daci_0651  two component LuxR family transcriptional regulator  33.83 
 
 		 209 aa  119  3.9999999999999996e-26  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.713834 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  32.67 
 
 		 215 aa  118  4.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  33.84 
 
 		 210 aa  118  7e-26  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.0301144 
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  29.21 
 
 		 210 aa  118  7e-26  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  33.17 
 
 		 215 aa  117  9e-26  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal  1 
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  29.7 
 
 		 210 aa  117  9.999999999999999e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  33.17 
 
 		 215 aa  117  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal  1 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  31.19 
 
 		 210 aa  116  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  31.86 
 
 		 238 aa  116  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_006369  lpl2571  transmission activator LetA  33.17 
 
 		 219 aa  117  1.9999999999999998e-25  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  33 
 
 		 210 aa  117  1.9999999999999998e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  116  1.9999999999999998e-25  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  31.68 
 
 		 210 aa  117  1.9999999999999998e-25  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  31.19 
 
 		 215 aa  117  1.9999999999999998e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  32.18 
 
 		 215 aa  116  3e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  116  3e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  116  3e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_011662  Tmz1t_0180  two component transcriptional regulator, LuxR family  30.3 
 
 		 213 aa  115  3e-25  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  116  3e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  32.83 
 
 		 215 aa  116  3e-25  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  33.5 
 
 		 215 aa  116  3e-25  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.118405 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  32.02 
 
 		 210 aa  115  3e-25  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  116  3e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  31.68 
 
 		 210 aa  115  3.9999999999999997e-25  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  32.18 
 
 		 215 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  31.19 
 
 		 218 aa  115  5e-25  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.972408 
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  32.67 
 
 		 282 aa  115  5e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_010622  Bphy_0097  two component LuxR family transcriptional regulator  34.67 
 
 		 218 aa  115  5e-25  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal  1 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  115  6e-25  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  115  6e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  32.67 
 
 		 215 aa  114  6.9999999999999995e-25  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  32.18 
 
 		 215 aa  115  6.9999999999999995e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  34.16 
 
 		 210 aa  114  1.0000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_008782  Ajs_3794  two component LuxR family transcriptional regulator  32.67 
 
 		 209 aa  114  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_3068  two component transcriptional regulator, LuxR family  32.67 
 
 		 209 aa  114  1.0000000000000001e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.44153  n/a   
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  113  2.0000000000000002e-24  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_010551  BamMC406_2966  two component LuxR family transcriptional regulator  33.17 
 
 		 218 aa  113  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  0.288922 
 
 
-
 
NC_008390  Bamb_3100  two component LuxR family transcriptional regulator  33.33 
 
 		 218 aa  113  2.0000000000000002e-24  Burkholderia ambifaria AMMD  Bacteria  normal  0.650822  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  31.98 
 
 		 214 aa  112  3e-24  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  31.19 
 
 		 215 aa  112  3e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_010814  Glov_1565  two component transcriptional regulator, LuxR family  34.47 
 
 		 214 aa  112  3e-24  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  112  3e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  112  3e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  33.67 
 
 		 218 aa  112  3e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  31.68 
 
 		 215 aa  112  3e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_010524  Lcho_1595  two component LuxR family transcriptional regulator  32.18 
 
 		 209 aa  112  4.0000000000000004e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00167261 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  32.5 
 
 		 235 aa  112  4.0000000000000004e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  32.18 
 
 		 215 aa  112  5e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  32.18 
 
 		 215 aa  112  5e-24  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  32.18 
 
 		 215 aa  112  5e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  33.17 
 
 		 210 aa  111  7.000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_008340  Mlg_2722  two component LuxR family transcriptional regulator  29.29 
 
 		 214 aa  111  7.000000000000001e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.378798 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  30.2 
 
 		 215 aa  111  7.000000000000001e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  33.33 
 
 		 224 aa  111  9e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
CP001637  EcDH1_1732  two component transcriptional regulator, LuxR family  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Escherichia coli DH1  Bacteria  hitchhiker  0.00000000000321601  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  32.21 
 
 		 219 aa  110  1.0000000000000001e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_2147  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000040455  n/a   
 
 
-
 
NC_011094  SeSA_A2103  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0532421  hitchhiker  0.00988724 
 
 
-
 
NC_011149  SeAg_B1173  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.0000706228  n/a   
 
 
-
 
NC_007948  Bpro_0709  two component LuxR family transcriptional regulator  31.5 
 
 		 224 aa  110  1.0000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  0.421893  normal  1 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  31.4 
 
 		 214 aa  110  1.0000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  33.17 
 
 		 218 aa  110  1.0000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.705126 
 
 
-
 
NC_011083  SeHA_C2162  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.284818  hitchhiker  0.000000016111 
 
 
-
 
NC_010498  EcSMS35_1269  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000584326  hitchhiker  0.00198125 
 
 
-
 
NC_010658  SbBS512_E1041  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000000644757  n/a   
 
 
-
 
NC_011205  SeD_A1296  response regulator  31.19 
 
 		 218 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0547167  hitchhiker  0.00000564902 
 
 
-
 
NC_008752  Aave_4382  two component LuxR family transcriptional regulator  32.18 
 
 		 209 aa  110  1.0000000000000001e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A0478  two-component response regulator  30.69 
 
 		 215 aa  109  2.0000000000000002e-23  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.0760202 
 
 
-
 
NC_010087  Bmul_5766  two component LuxR family transcriptional regulator  30.88 
 
 		 212 aa  110  2.0000000000000002e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.918691  normal  1 
 
 
-
 
NC_010622  Bphy_1508  two component LuxR family transcriptional regulator  33.66 
 
 		 236 aa  109  2.0000000000000002e-23  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008786  Veis_2180  two component LuxR family transcriptional regulator  31.34 
 
 		 209 aa  110  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.876214 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  32.67 
 
 		 215 aa  110  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  30.2 
 
 		 213 aa  110  2.0000000000000002e-23  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.226192 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  31.37 
 
 		 224 aa  110  2.0000000000000002e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  31.68 
 
 		 213 aa  109  4.0000000000000004e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010468  EcolC_1725  response regulator  30.69 
 
 		 218 aa  109  4.0000000000000004e-23  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000351159  normal  1 
 
 
-
 
NC_009800  EcHS_A2012  response regulator  30.69 
 
 		 218 aa  108  5e-23  Escherichia coli HS  Bacteria  hitchhiker  0.000000000124814  n/a   
 
 
-
 
NC_011353  ECH74115_2686  response regulator  30.69 
 
 		 218 aa  108  5e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000957663  normal  0.053055 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  30.65 
 
 		 216 aa  108  6e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  32.16 
 
 		 215 aa  108  6e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
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