Gene Lcho_1595 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1595 
Symbol 
ID6162614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1692208 
End bp1692837 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content66% 
IMG OID641664349 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001790627 
Protein GI171058278 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00167261 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTCGCG TGATGCTCTG CGACGACCAT GCCCTGATCC GACGCGGCAT CCGCGACACG 
CTGGCCGAAC AGCCCGACAT GGAAGTGGTC GGCGAAGCCG GCGAATACGG CGAGTTGCGC
GCGCTCCTGC GCAAGCAGAC CTGCGACGTG CTGGTGCTCG ACATCAACAT GCCCGGGCGC
AGCGGCCTCG ACGTGCTGCA TGCGCTCAAG GAAGAAGGCT CGCCGATCCG GGTGCTGATC
GTCTCGATGT ACCCCGAAGA CCAGTACGCC CTGCGGGCGC TGAAGGCCGG CGCCTACGGC
TACGTCAACA AGGGCAGCGA CCCGGCACAG ATCGTCGCCG CGGCGCGCAT GGTGGCGCAG
GGGCGCAAGT ACATCACGGC CGAGATGGCG CAGATGCTGG TCGAGAACCT CACCACGCCC
TCCAGCGAGG CCGCGCACGA CAAGCTTTCC GACCGCGAAT TGCAGACCTT GACGATGATC
GCCTCGGGCA AGCGGCTGTC AGACATCGCC GAGGAGCTGA CGCTCAGCCC CAAGACCGTC
AGCGTCTACC GCGCGCGGGT ACTCGAGAAG CTGGGCCTGG CCAACAACTC CGAGCTGACG
GTCTACGCGA TCCGCAACGG CCTGGTCTGA
 
Protein sequence
MIRVMLCDDH ALIRRGIRDT LAEQPDMEVV GEAGEYGELR ALLRKQTCDV LVLDINMPGR 
SGLDVLHALK EEGSPIRVLI VSMYPEDQYA LRALKAGAYG YVNKGSDPAQ IVAAARMVAQ
GRKYITAEMA QMLVENLTTP SSEAAHDKLS DRELQTLTMI ASGKRLSDIA EELTLSPKTV
SVYRARVLEK LGLANNSELT VYAIRNGLV