Gene Lcho_1400 details

Gene Information

• Locus tag: Lcho_1400
• ID: 6160021
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1487765
• End bp: 1488382
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641664154
• Product: two component LuxR family transcriptional regulator
• Protein accession: YP_001790433
• Protein GI: 171058084
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 49
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCGGACG ACCATCCGGT CGTTCGCCAG CGCCTGCGCC AGATCCTGAT GGCCGAGCCC 
GCCCTGACGG TGGTCGCGGA GGCCGGCGAC GGCGACGAAG CGCTCGCGCT GGCCCGGTCG 
ACCGACTGGG ATCTGGCGCT GCTCGACTTC TCGATGCCCG GCTGCAGCGG CCTGAGCCTG 
ATCGAGCACG TGCGCCGAGA CTTCCCGCAG CGGCCGGTGC TGGTGCTGAG CGTCCATGAC 
GAGCAGTTGC TCGCGCCGCA CGTGCTCAGG GCCGGCGCGT CGGGTTACCT CTGCAAGGAG 
TGCGCGACCG AACAGCTGAT CCAGGCGATC CGCGCCGTCA CGGCCGGCGG CACCCATGTC 
AGCGCGCCGG TGGCGCAGCG GCTGGCATGG CAGGTCGCGA TCGAGTCGGG CGGGGCGCCG 
CACGAGCGGC TGTCCGACCG CGAATACCGG GTCATGTGGC TGTTGAGCAG CGGCCGGCAC 
ATCGTCGAGA TCGCCCAGGA ACTGCATCTG CGGCCGCGCA CCGTCGCCAG CTATCGCCAC 
AGGGTGCTGC GCAAACTGGG TCTGCATGAC ACCGCCGAAC TGGTGAGCTA CGCGGTCCGT 
CATGAGCTCG TGGGCTGA 

 

Protein sequence

MADDHPVVRQ RLRQILMAEP ALTVVAEAGD GDEALALARS TDWDLALLDF SMPGCSGLSL 
IEHVRRDFPQ RPVLVLSVHD EQLLAPHVLR AGASGYLCKE CATEQLIQAI RAVTAGGTHV 
SAPVAQRLAW QVAIESGGAP HERLSDREYR VMWLLSSGRH IVEIAQELHL RPRTVASYRH 
RVLRKLGLHD TAELVSYAVR HELVG