More than 300 homologs were found in PanDaTox collection
for query gene Cpin_0255 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_0255  two component transcriptional regulator, winged helix family  100 
 
 		 232 aa  470  1e-132  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_4089  two component transcriptional regulator, winged helix family  51.3 
 
 		 230 aa  248  7e-65  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  hitchhiker  0.00519658 
 
 
-
 
NC_013037  Dfer_5352  two component transcriptional regulator, winged helix family  48.89 
 
 		 224 aa  223  2e-57  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002950  PG1089  DNA-binding response regulator RprY  46.49 
 
 		 245 aa  211  5.999999999999999e-54  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.414682 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  44.25 
 
 		 229 aa  209  4e-53  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013730  Slin_5387  two component transcriptional regulator, winged helix family  44.44 
 
 		 236 aa  204  8e-52  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_3651  two component transcriptional regulator, winged helix family  43.56 
 
 		 228 aa  204  1e-51  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0435949 
 
 
-
 
NC_014230  CA2559_09498  two-component system, transcriptional regulatory protein  44.64 
 
 		 236 aa  202  4e-51  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1246  two component transcriptional regulator, winged helix family  44.05 
 
 		 233 aa  197  2.0000000000000003e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.877806  normal  1 
 
 
-
 
NC_013132  Cpin_2742  two component transcriptional regulator, winged helix family  40.87 
 
 		 230 aa  194  7e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.142828  normal  1 
 
 
-
 
NC_013162  Coch_0209  two component transcriptional regulator, winged helix family  43.3 
 
 		 251 aa  193  2e-48  Capnocytophaga ochracea DSM 7271  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_3460  two component transcriptional regulator  42.41 
 
 		 238 aa  192  3e-48  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0108229  n/a   
 
 
-
 
NC_013132  Cpin_1649  two component transcriptional regulator, winged helix family  41.67 
 
 		 236 aa  191  9e-48  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_3566  two component transcriptional regulator, winged helix family  43.81 
 
 		 228 aa  189  2.9999999999999997e-47  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.720677 
 
 
-
 
NC_013061  Phep_0203  response regulator receiver  41.74 
 
 		 231 aa  187  1e-46  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.359659 
 
 
-
 
NC_009441  Fjoh_4970  two component transcriptional regulator  43.36 
 
 		 228 aa  186  3e-46  Flavobacterium johnsoniae UW101  Bacteria  normal  0.375881  n/a   
 
 
-
 
NC_013132  Cpin_1242  two component transcriptional regulator, winged helix family  40.89 
 
 		 234 aa  184  1.0000000000000001e-45  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_0856  two component transcriptional regulator, winged helix family  38.43 
 
 		 233 aa  182  4.0000000000000006e-45  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_4521  two component transcriptional regulator  45.7 
 
 		 230 aa  182  4.0000000000000006e-45  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_7053  two component transcriptional regulator, winged helix family  38.26 
 
 		 248 aa  169  4e-41  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00262574  normal  1 
 
 
-
 
NC_013132  Cpin_0346  two component transcriptional regulator, winged helix family  40.27 
 
 		 234 aa  167  2e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  37.89 
 
 		 234 aa  163  2.0000000000000002e-39  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  38.7 
 
 		 234 aa  157  1e-37  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal  1 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  35.34 
 
 		 256 aa  152  5.9999999999999996e-36  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  39.3 
 
 		 257 aa  150  2e-35  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  36.28 
 
 		 225 aa  149  3e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  36.12 
 
 		 248 aa  149  4e-35  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  34.91 
 
 		 230 aa  147  2.0000000000000003e-34  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  36.68 
 
 		 236 aa  145  5e-34  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal  1 
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  36.44 
 
 		 252 aa  145  5e-34  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  36.8 
 
 		 235 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal  1 
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  33.62 
 
 		 230 aa  143  2e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_0528  two component transcriptional regulator, winged helix family  36.68 
 
 		 230 aa  143  3e-33  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  36.57 
 
 		 240 aa  141  7e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  36.05 
 
 		 256 aa  139  6e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010581  Bind_3546  two component transcriptional regulator  33.91 
 
 		 273 aa  137  2e-31  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.376665  normal  0.686762 
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  32.33 
 
 		 241 aa  136  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.154165 
 
 
-
 
NC_008541  Arth_0655  two component transcriptional regulator  35.56 
 
 		 246 aa  137  2e-31  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  35.78 
 
 		 236 aa  137  2e-31  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_009665  Shew185_0604  two component transcriptional regulator  35.22 
 
 		 227 aa  135  4e-31  Shewanella baltica OS185  Bacteria  decreased coverage  0.00704602  n/a   
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  35.44 
 
 		 248 aa  135  4e-31  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0632  two component transcriptional regulator  35.22 
 
 		 227 aa  135  4e-31  Shewanella baltica OS195  Bacteria  normal  0.157641  normal  1 
 
 
-
 
NC_009380  Strop_4477  response regulator receiver  36.16 
 
 		 228 aa  135  4e-31  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.0220713 
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  36.24 
 
 		 234 aa  135  6.0000000000000005e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013170  Ccur_03590  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  33.19 
 
 		 226 aa  135  7.000000000000001e-31  Cryptobacterium curtum DSM 15641  Bacteria  normal  1  normal  0.0594239 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  38.39 
 
 		 236 aa  134  9e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  unclonable  0.0000000182155 
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  35.9 
 
 		 239 aa  134  9e-31  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_013161  Cyan8802_4261  two component transcriptional regulator, winged helix family  33.33 
 
 		 224 aa  134  9.999999999999999e-31  Cyanothece sp. PCC 8802  Bacteria  normal  0.906422  normal  0.0109867 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  33.48 
 
 		 227 aa  134  9.999999999999999e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_009012  Cthe_0799  two component transcriptional regulator  34.21 
 
 		 225 aa  134  9.999999999999999e-31  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_0804  two component transcriptional regulator, winged helix family  35.11 
 
 		 246 aa  133  1.9999999999999998e-30  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013169  Ksed_08590  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.84 
 
 		 239 aa  134  1.9999999999999998e-30  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  0.857083 
 
 
-
 
NC_008345  Sfri_1132  two component transcriptional regulator, winged helix family protein  35.53 
 
 		 227 aa  133  1.9999999999999998e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.12057  n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  35.68 
 
 		 224 aa  133  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal  1 
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  36.24 
 
 		 230 aa  134  1.9999999999999998e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  34.51 
 
 		 235 aa  133  3e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_013174  Jden_1827  two component transcriptional regulator, winged helix family  37.22 
 
 		 227 aa  132  3e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  35.44 
 
 		 248 aa  132  3.9999999999999996e-30  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
NC_009091  P9301_18111  two-component response regulator  35.44 
 
 		 248 aa  132  3.9999999999999996e-30  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  1  n/a   
 
 
-
 
NC_011206  Lferr_1151  two component transcriptional regulator, winged helix family  34.78 
 
 		 243 aa  132  5e-30  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011761  AFE_1434  DNA-binding response regulator PhoB  34.78 
 
 		 243 aa  132  5e-30  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  35.81 
 
 		 243 aa  132  5e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  34.93 
 
 		 255 aa  132  6e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  35.09 
 
 		 226 aa  132  6e-30  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  35.44 
 
 		 248 aa  131  6.999999999999999e-30  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  34.36 
 
 		 224 aa  132  6.999999999999999e-30  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  35.62 
 
 		 239 aa  131  7.999999999999999e-30  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_011726  PCC8801_4222  two component transcriptional regulator, winged helix family  32.61 
 
 		 224 aa  131  7.999999999999999e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  35.62 
 
 		 239 aa  131  7.999999999999999e-30  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  34.22 
 
 		 228 aa  130  1.0000000000000001e-29  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_1490  two component transcriptional regulator  34.76 
 
 		 239 aa  130  1.0000000000000001e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000120928  n/a   
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  33.04 
 
 		 241 aa  130  2.0000000000000002e-29  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.22 
 
 		 238 aa  130  2.0000000000000002e-29  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  34.2 
 
 		 235 aa  130  2.0000000000000002e-29  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  34.07 
 
 		 223 aa  130  2.0000000000000002e-29  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  35.84 
 
 		 237 aa  130  2.0000000000000002e-29  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  34.07 
 
 		 236 aa  130  2.0000000000000002e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  32.44 
 
 		 223 aa  130  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  33.92 
 
 		 228 aa  129  3e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  33.77 
 
 		 236 aa  129  3e-29  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_014150  Bmur_2474  two component transcriptional regulator, winged helix family  35.19 
 
 		 227 aa  129  3e-29  Brachyspira murdochii DSM 12563  Bacteria  normal  0.0950849  n/a   
 
 
-
 
NC_008752  Aave_3002  two component transcriptional regulator  31.74 
 
 		 230 aa  129  3e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.67465  normal  0.369251 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  35.5 
 
 		 235 aa  129  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  35.24 
 
 		 236 aa  129  4.0000000000000003e-29  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  33.48 
 
 		 224 aa  129  4.0000000000000003e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal  1 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  35.37 
 
 		 229 aa  129  5.0000000000000004e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  0.834843 
 
 
-
 
NC_009953  Sare_4990  two component transcriptional regulator  35.71 
 
 		 228 aa  129  6e-29  Salinispora arenicola CNS-205  Bacteria  normal  0.866601  hitchhiker  0.000134834 
 
 
-
 
NC_010001  Cphy_1986  two component transcriptional regulator  29.52 
 
 		 240 aa  128  6e-29  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013165  Shel_13160  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.07 
 
 		 228 aa  128  6e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  0.719024 
 
 
-
 
NC_013517  Sterm_0289  two component transcriptional regulator, winged helix family  33.91 
 
 		 232 aa  128  7.000000000000001e-29  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.0000126796  n/a   
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  33.91 
 
 		 227 aa  128  7.000000000000001e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  36.28 
 
 		 234 aa  128  7.000000000000001e-29  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  33.05 
 
 		 254 aa  128  8.000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  34.38 
 
 		 224 aa  128  9.000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  35.06 
 
 		 235 aa  127  1.0000000000000001e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  33.78 
 
 		 233 aa  127  1.0000000000000001e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_3453  two component transcriptional regulator  35.84 
 
 		 224 aa  127  1.0000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013457  VEA_001059  putative two-component response regulator  35.65 
 
 		 235 aa  127  1.0000000000000001e-28  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  35.65 
 
 		 242 aa  127  1.0000000000000001e-28  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  35.65 
 
 		 242 aa  126  2.0000000000000002e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.559477 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>