| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7053 |
|---|
| Symbol | |
|---|
| ID | 8363245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8826091 |
|---|
| End bp | 8826837 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644969186 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003126655 |
|---|
| Protein GI | 256426002 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00262574 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAGTA ATGTACAAAT TCTCCTTGCC GAAGATGACT ATCAGTATGG TAGCATCATT
AAGAAGCAGC TGGAAGCAGC AGGGTACGCG GTCGTGCATT GTTTTGACGG CGAGGTAGCC
CTGAAAAAGT TTCAAAGGGA CGATTTTGAT CTTTGCATAC TGGATGTACT GATGCCGAAG
AAAGACGGCT TTACGCTGGC GCAGGATATC CGGAAGAAGA ACGGTATGAT ACCGATCCTG
TTTATTTCTT CGAAGGCGAC GGACGAGGAC AGGCTGCACG GTTTCCGGAT AGGTGGGGAC
GATTTTCTGG TAAAACCGTT TAGTATGCGT GAGCTGATCA TGCGTATCGG GGTGTTCCTG
AGAAGAACCT TGCCCAAGGA TGTACCGGGA GATGGTATCT ATAAACTGGG CGATGACGTC
AGATTCAATT ACGAAGAAAA AGAATTGACA CGCGCCGGAG GCGAACCTTT TGCTACGCTT
ACGAAGAAGG AGGCGAAGGT ATTACGCTAC CTGGTGGAAA ACAGCAATAA ACTTGTAAAA
AGGGACGAGA TCCTGCTGAA GGTATGGGGG AACAGTAGTT TCTTTTCCAG CAGAAGCATG
GATGTATTCC TGACACGTTT ACGAAAACAT TTTAAAGAGG AACCGGGTAT TGCGCTGGAG
ACGCTGCATA ATGTGGGCGT CCGGCTGAAT ATTCCTGAAT GTACAGATAA AGACAGCGAA
TCCACGTCTA CAGATAACGA AGGGTGA
|
|---|
| Protein sequence | MVSNVQILLA EDDYQYGSII KKQLEAAGYA VVHCFDGEVA LKKFQRDDFD LCILDVLMPK
KDGFTLAQDI RKKNGMIPIL FISSKATDED RLHGFRIGGD DFLVKPFSMR ELIMRIGVFL
RRTLPKDVPG DGIYKLGDDV RFNYEEKELT RAGGEPFATL TKKEAKVLRY LVENSNKLVK
RDEILLKVWG NSSFFSSRSM DVFLTRLRKH FKEEPGIALE TLHNVGVRLN IPECTDKDSE
STSTDNEG
|
|---|
| |