More than 300 homologs were found in PanDaTox collection
for query gene Cpin_1246 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_1246  two component transcriptional regulator, winged helix family  100 
 
 		 233 aa  471  1e-132  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.877806  normal  1 
 
 
-
 
NC_009441  Fjoh_3460  two component transcriptional regulator  58.8 
 
 		 238 aa  285  5.999999999999999e-76  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0108229  n/a   
 
 
-
 
NC_014230  CA2559_09498  two-component system, transcriptional regulatory protein  56.41 
 
 		 236 aa  278  4e-74  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013162  Coch_0209  two component transcriptional regulator, winged helix family  56 
 
 		 251 aa  259  3e-68  Capnocytophaga ochracea DSM 7271  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_3651  two component transcriptional regulator, winged helix family  50.44 
 
 		 228 aa  247  1e-64  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0435949 
 
 
-
 
NC_002950  PG1089  DNA-binding response regulator RprY  51.97 
 
 		 245 aa  241  7e-63  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.414682 
 
 
-
 
NC_013061  Phep_0203  response regulator receiver  52.19 
 
 		 231 aa  238  6.999999999999999e-62  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.359659 
 
 
-
 
NC_013730  Slin_5387  two component transcriptional regulator, winged helix family  47.01 
 
 		 236 aa  231  9e-60  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_3566  two component transcriptional regulator, winged helix family  49.78 
 
 		 228 aa  219  3.9999999999999997e-56  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.720677 
 
 
-
 
NC_009441  Fjoh_4970  two component transcriptional regulator  48.67 
 
 		 228 aa  218  6e-56  Flavobacterium johnsoniae UW101  Bacteria  normal  0.375881  n/a   
 
 
-
 
NC_013037  Dfer_0856  two component transcriptional regulator, winged helix family  45.18 
 
 		 233 aa  213  1.9999999999999998e-54  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_1242  two component transcriptional regulator, winged helix family  47.6 
 
 		 234 aa  210  1e-53  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_0255  two component transcriptional regulator, winged helix family  44.05 
 
 		 232 aa  205  4e-52  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  42.92 
 
 		 229 aa  202  4e-51  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_5352  two component transcriptional regulator, winged helix family  42.86 
 
 		 224 aa  201  6e-51  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  41.95 
 
 		 234 aa  199  3e-50  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_2742  two component transcriptional regulator, winged helix family  43.36 
 
 		 230 aa  194  1e-48  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.142828  normal  1 
 
 
-
 
NC_009441  Fjoh_4521  two component transcriptional regulator  44.09 
 
 		 230 aa  190  2e-47  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1649  two component transcriptional regulator, winged helix family  42.42 
 
 		 236 aa  189  4e-47  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_0346  two component transcriptional regulator, winged helix family  41.99 
 
 		 234 aa  182  5.0000000000000004e-45  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_7053  two component transcriptional regulator, winged helix family  41.15 
 
 		 248 aa  178  8e-44  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00262574  normal  1 
 
 
-
 
NC_013132  Cpin_4089  two component transcriptional regulator, winged helix family  39.47 
 
 		 230 aa  174  8e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  hitchhiker  0.00519658 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  39.07 
 
 		 235 aa  157  2e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal  1 
 
 
-
 
NC_011830  Dhaf_2159  two component transcriptional regulator, winged helix family  36.89 
 
 		 227 aa  153  2e-36  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00177162  n/a   
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  37.67 
 
 		 236 aa  153  2.9999999999999998e-36  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal  1 
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  35.93 
 
 		 234 aa  147  9e-35  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal  1 
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  34.67 
 
 		 230 aa  147  1.0000000000000001e-34  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  33.48 
 
 		 223 aa  143  3e-33  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  33.48 
 
 		 223 aa  142  4e-33  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  33.78 
 
 		 256 aa  142  4e-33  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  33.48 
 
 		 223 aa  142  4e-33  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_3069  two component transcriptional regulator  34.36 
 
 		 230 aa  142  7e-33  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.0000000467461  n/a   
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  33.04 
 
 		 223 aa  140  9.999999999999999e-33  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_005957  BT9727_1191  response regulator  33.04 
 
 		 223 aa  141  9.999999999999999e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  33.04 
 
 		 223 aa  141  9.999999999999999e-33  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_006274  BCZK1193  response regulator  33.04 
 
 		 223 aa  141  9.999999999999999e-33  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  33.04 
 
 		 223 aa  140  9.999999999999999e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  33.78 
 
 		 230 aa  140  9.999999999999999e-33  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  33.04 
 
 		 223 aa  140  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  1  normal  0.910988 
 
 
-
 
NC_013169  Ksed_03240  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  32.29 
 
 		 229 aa  141  9.999999999999999e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.604152  normal  1 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  34.93 
 
 		 228 aa  140  9.999999999999999e-33  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  36.61 
 
 		 227 aa  140  1.9999999999999998e-32  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  32.44 
 
 		 245 aa  139  3e-32  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0926269 
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  32.44 
 
 		 245 aa  139  3.9999999999999997e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal  1 
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  33.76 
 
 		 238 aa  139  4.999999999999999e-32  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1215  two component transcriptional regulator  32.6 
 
 		 223 aa  138  8.999999999999999e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.533573  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  35.24 
 
 		 225 aa  137  1e-31  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  32.02 
 
 		 241 aa  137  1e-31  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.154165 
 
 
-
 
NC_009718  Fnod_0785  two component transcriptional regulator  35.96 
 
 		 229 aa  137  1e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0635827  n/a   
 
 
-
 
NC_010320  Teth514_2216  two component transcriptional regulator  35.71 
 
 		 224 aa  137  1e-31  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4670  two component transcriptional regulator, winged helix family  32.16 
 
 		 234 aa  137  2e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  35.4 
 
 		 235 aa  137  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  34.96 
 
 		 235 aa  137  2e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  33.19 
 
 		 237 aa  136  2e-31  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  33.62 
 
 		 234 aa  136  3.0000000000000003e-31  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  35.4 
 
 		 235 aa  136  3.0000000000000003e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  35.4 
 
 		 235 aa  135  4e-31  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  35.11 
 
 		 224 aa  135  4e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_1861  two component transcriptional regulator  31.7 
 
 		 225 aa  135  5e-31  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000248634  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  33.19 
 
 		 234 aa  135  6.0000000000000005e-31  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  32.89 
 
 		 227 aa  135  6.0000000000000005e-31  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  35.71 
 
 		 235 aa  135  7.000000000000001e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B0458  DNA-binding response regulator  34.65 
 
 		 229 aa  135  7.000000000000001e-31  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.00396749 
 
 
-
 
NC_011725  BCB4264_A4781  DNA-binding response regulator  34.65 
 
 		 229 aa  135  7.000000000000001e-31  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_010622  Bphy_2783  two component transcriptional regulator  34.21 
 
 		 245 aa  135  8e-31  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  35.71 
 
 		 235 aa  135  8e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  35.71 
 
 		 235 aa  135  8e-31  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  34.96 
 
 		 235 aa  134  9e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  33.18 
 
 		 225 aa  134  9e-31  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  34.96 
 
 		 235 aa  134  9e-31  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  34.96 
 
 		 235 aa  134  9e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  35.11 
 
 		 257 aa  134  9.999999999999999e-31  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  35.27 
 
 		 236 aa  134  9.999999999999999e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  unclonable  0.0000000182155 
 
 
-
 
NC_013515  Smon_0737  two component transcriptional regulator, winged helix family  38.24 
 
 		 224 aa  134  9.999999999999999e-31  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  33.04 
 
 		 223 aa  134  9.999999999999999e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_2240  DNA-binding response regulator  34.07 
 
 		 227 aa  133  1.9999999999999998e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.85177e-28 
 
 
-
 
NC_005945  BAS2056  DNA-binding response regulator  34.07 
 
 		 227 aa  133  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.413172  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  34.05 
 
 		 243 aa  133  1.9999999999999998e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_011725  BCB4264_A1962  DNA-binding response regulator  37 
 
 		 225 aa  133  1.9999999999999998e-30  Bacillus cereus B4264  Bacteria  normal  0.597164  n/a   
 
 
-
 
NC_007530  GBAA_2212  DNA-binding response regulator  34.07 
 
 		 227 aa  133  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  31.11 
 
 		 230 aa  134  1.9999999999999998e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_010180  BcerKBAB4_5471  two component transcriptional regulator  33.63 
 
 		 221 aa  134  1.9999999999999998e-30  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00800002  hitchhiker  0.0013378 
 
 
-
 
NC_013530  Xcel_2514  two component transcriptional regulator, winged helix family  34.07 
 
 		 226 aa  133  1.9999999999999998e-30  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.24701  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  36.09 
 
 		 239 aa  134  1.9999999999999998e-30  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_009012  Cthe_1408  two component transcriptional regulator  35.09 
 
 		 232 aa  134  1.9999999999999998e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  32.19 
 
 		 235 aa  133  1.9999999999999998e-30  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  36.09 
 
 		 239 aa  134  1.9999999999999998e-30  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_003296  RS03140  two component response regulator transcription regulator protein  33.48 
 
 		 245 aa  133  3e-30  Ralstonia solanacearum GMI1000  Bacteria  normal  0.249511  normal  1 
 
 
-
 
NC_011830  Dhaf_0940  two component transcriptional regulator, winged helix family  34.08 
 
 		 237 aa  132  3e-30  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324642  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  36.56 
 
 		 232 aa  132  3e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  32.59 
 
 		 225 aa  133  3e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
NC_011831  Cagg_2168  two component transcriptional regulator, winged helix family  30.84 
 
 		 247 aa  133  3e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  0.222815 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  33.62 
 
 		 228 aa  133  3e-30  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3138  two component transcriptional regulator  34.07 
 
 		 224 aa  132  3e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B3366  DNA-binding response regulator  37 
 
 		 225 aa  133  3e-30  Bacillus cereus G9842  Bacteria  normal  0.166078  hitchhiker  0.00000000000000126215 
 
 
-
 
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