Gene SO_4388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4388 
Symbol 
ID1171990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4584567 
End bp4585250 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content41% 
IMG OID637346114 
ProductDNA-binding response regulator 
Protein accessionNP_719912 
Protein GI24375869 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTC TTATCGCCGA AGATGATATT CATATCCGCC AAGGGTTGGC CGATATGCTT 
TCCAGAGAGG GATATTCCGT TCTGCTTGCT GATAATGGCA AAGTTGCCCT GTTAAAATAT 
CAACAAGAGC AGCCGGATTT TATTATTCTG GATATTATGA TGCCTGAGTT AGATGGCTAT 
TCAGTCTGCA AAGAAATCAG AAAGCACGAT GAACAAACGC CGGTGATCTT TTTATCCGCT 
AAAGGTGAAG AGCTTGATAA AGTTCTGGGG CTTGAGCTTG GTGCGGATGA CTATATTAAT 
AAACCATTTG GTATTCACGA GGTTCGGGCG CGAATCAAAA CAATTGCCCG ACGCTGTCTG 
AAAGCCAAAC AGAATTCACC AGATCAAAGC TTCATTTTCG GTGATCTGAC AATTTACCCG 
ATGGAACTCT GTGCTAAACG GCAACAACAA ACGATTGAGC TATCACTGCG GGAGATAAAA 
ATTCTGTCAT GTCTACACAG GTATAAAAAC CAAATCGTGA CCAGAGACAT GCTGTTGGAT 
TGGGTGTGGG GCGTTGATCA TTTACCTAAC AGCAGGACAT TAGATCAACA TATTTCAAAG 
CTCAGAAAAA TGATTGAATC AGATCCTAAT ACACCTTTAT TAATCAAGAC GATTCACGGC 
TATGGCTACC GGTATCAAGA ATAA
 
Protein sequence
MKILIAEDDI HIRQGLADML SREGYSVLLA DNGKVALLKY QQEQPDFIIL DIMMPELDGY 
SVCKEIRKHD EQTPVIFLSA KGEELDKVLG LELGADDYIN KPFGIHEVRA RIKTIARRCL 
KAKQNSPDQS FIFGDLTIYP MELCAKRQQQ TIELSLREIK ILSCLHRYKN QIVTRDMLLD 
WVWGVDHLPN SRTLDQHISK LRKMIESDPN TPLLIKTIHG YGYRYQE