More than 300 homologs were found in PanDaTox collection
for query gene CA2559_03275 on replicon NC_014230
Organism: Croceibacter atlanticus HTCC2559



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  100 
 
 		 234 aa  472  1e-132  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_4521  two component transcriptional regulator  57.39 
 
 		 230 aa  264  8e-70  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_3566  two component transcriptional regulator, winged helix family  42.29 
 
 		 228 aa  200  9.999999999999999e-51  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.720677 
 
 
-
 
NC_013132  Cpin_0346  two component transcriptional regulator, winged helix family  45.11 
 
 		 234 aa  192  3e-48  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_1242  two component transcriptional regulator, winged helix family  41.53 
 
 		 234 aa  190  2e-47  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_3460  two component transcriptional regulator  42.49 
 
 		 238 aa  188  7e-47  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0108229  n/a   
 
 
-
 
NC_009441  Fjoh_4970  two component transcriptional regulator  43.23 
 
 		 228 aa  187  1e-46  Flavobacterium johnsoniae UW101  Bacteria  normal  0.375881  n/a   
 
 
-
 
NC_013132  Cpin_1246  two component transcriptional regulator, winged helix family  41.95 
 
 		 233 aa  187  2e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.877806  normal  1 
 
 
-
 
NC_013037  Dfer_5352  two component transcriptional regulator, winged helix family  35.68 
 
 		 224 aa  184  1.0000000000000001e-45  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014230  CA2559_09498  two-component system, transcriptional regulatory protein  41.81 
 
 		 236 aa  180  1e-44  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_3651  two component transcriptional regulator, winged helix family  37 
 
 		 228 aa  175  4e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0435949 
 
 
-
 
NC_013061  Phep_0203  response regulator receiver  39.13 
 
 		 231 aa  174  7e-43  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.359659 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  36.12 
 
 		 229 aa  175  7e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002950  PG1089  DNA-binding response regulator RprY  37 
 
 		 245 aa  173  1.9999999999999998e-42  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.414682 
 
 
-
 
NC_013132  Cpin_7053  two component transcriptional regulator, winged helix family  38.26 
 
 		 248 aa  172  3.9999999999999995e-42  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00262574  normal  1 
 
 
-
 
NC_013162  Coch_0209  two component transcriptional regulator, winged helix family  40.17 
 
 		 251 aa  168  5e-41  Capnocytophaga ochracea DSM 7271  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1649  two component transcriptional regulator, winged helix family  36.02 
 
 		 236 aa  167  2e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_4089  two component transcriptional regulator, winged helix family  37.44 
 
 		 230 aa  165  6.9999999999999995e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  hitchhiker  0.00519658 
 
 
-
 
NC_013132  Cpin_0255  two component transcriptional regulator, winged helix family  37.89 
 
 		 232 aa  163  2.0000000000000002e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013730  Slin_5387  two component transcriptional regulator, winged helix family  35.44 
 
 		 236 aa  163  3e-39  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  35.06 
 
 		 236 aa  160  2e-38  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal  1 
 
 
-
 
NC_013037  Dfer_0856  two component transcriptional regulator, winged helix family  33.77 
 
 		 233 aa  158  7e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  37.44 
 
 		 225 aa  145  5e-34  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  36.56 
 
 		 236 aa  145  5e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  31.6 
 
 		 230 aa  145  6e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  32.31 
 
 		 238 aa  145  7.0000000000000006e-34  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  34.36 
 
 		 236 aa  144  1e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  unclonable  0.0000000182155 
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  36.09 
 
 		 225 aa  144  1e-33  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  35.24 
 
 		 230 aa  142  5e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal  1 
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  34.38 
 
 		 242 aa  142  5e-33  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_004116  SAG0393  DNA-binding response regulator  34.2 
 
 		 228 aa  141  7e-33  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.632289  n/a   
 
 
-
 
NC_011830  Dhaf_2159  two component transcriptional regulator, winged helix family  32.74 
 
 		 227 aa  140  1.9999999999999998e-32  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00177162  n/a   
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  33.63 
 
 		 257 aa  140  1.9999999999999998e-32  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  32.22 
 
 		 256 aa  139  3.9999999999999997e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  33.33 
 
 		 228 aa  138  6e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  32.44 
 
 		 255 aa  138  6e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  35.37 
 
 		 234 aa  138  7e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal  1 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  33.04 
 
 		 243 aa  138  7e-32  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_014212  Mesil_3146  two component transcriptional regulator, winged helix family  33.04 
 
 		 218 aa  138  7.999999999999999e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  0.149495  normal  1 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  34.63 
 
 		 230 aa  137  1e-31  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  35.09 
 
 		 235 aa  137  1e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_3703  two component transcriptional regulator  32.9 
 
 		 232 aa  137  1e-31  Saccharophagus degradans 2-40  Bacteria  normal  0.230236  normal  0.0884672 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  34.06 
 
 		 235 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal  1 
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  29 
 
 		 230 aa  136  2e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_2264  two component transcriptional regulator, winged helix family  33.48 
 
 		 231 aa  137  2e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00910741  n/a   
 
 
-
 
NC_010001  Cphy_1679  two component transcriptional regulator  33.19 
 
 		 224 aa  136  2e-31  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_2286  response regulator GltR  35.93 
 
 		 241 aa  137  2e-31  Psychromonas ingrahamii 37  Bacteria  normal  0.336147  normal  1 
 
 
-
 
NC_008009  Acid345_3061  two component transcriptional regulator  32.76 
 
 		 229 aa  136  3.0000000000000003e-31  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.296421  normal  1 
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  33.33 
 
 		 238 aa  135  4e-31  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  30.43 
 
 		 228 aa  135  4e-31  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  33.76 
 
 		 230 aa  135  4e-31  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
NC_008705  Mkms_4387  two component transcriptional regulator  33.76 
 
 		 230 aa  135  4e-31  Mycobacterium sp. KMS  Bacteria  normal  0.0316317  normal  1 
 
 
-
 
NC_009077  Mjls_4681  two component transcriptional regulator  33.76 
 
 		 230 aa  135  4e-31  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.354926 
 
 
-
 
NC_002976  SERP1055  DNA-binding response regulator SrrA  30.64 
 
 		 241 aa  135  5e-31  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_2316  two component transcriptional regulator PhoB, winged helix family  30.3 
 
 		 230 aa  135  7.000000000000001e-31  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  34.78 
 
 		 223 aa  134  8e-31  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  33.33 
 
 		 230 aa  134  8e-31  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  31 
 
 		 239 aa  134  9e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  29.11 
 
 		 241 aa  134  9.999999999999999e-31  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.154165 
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  32.02 
 
 		 235 aa  134  9.999999999999999e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  32.9 
 
 		 235 aa  134  9.999999999999999e-31  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_2180  DNA-binding response regulator  34.48 
 
 		 223 aa  134  9.999999999999999e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0299585  n/a   
 
 
-
 
NC_008345  Sfri_0311  two component transcriptional regulator, winged helix family protein  34.67 
 
 		 228 aa  134  9.999999999999999e-31  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00012342  n/a   
 
 
-
 
NC_009654  Mmwyl1_2625  two component transcriptional regulator  34.76 
 
 		 232 aa  134  9.999999999999999e-31  Marinomonas sp. MWYL1  Bacteria  normal  1  unclonable  0.00000000000561273 
 
 
-
 
NC_009012  Cthe_1408  two component transcriptional regulator  32.46 
 
 		 232 aa  134  9.999999999999999e-31  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_1491  two component transcriptional regulator PhoB, winged helix family  30.47 
 
 		 235 aa  134  9.999999999999999e-31  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  33.19 
 
 		 223 aa  134  1.9999999999999998e-30  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  32.59 
 
 		 231 aa  133  1.9999999999999998e-30  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.121364 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  33.04 
 
 		 237 aa  134  1.9999999999999998e-30  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  31.58 
 
 		 235 aa  134  1.9999999999999998e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  32.91 
 
 		 231 aa  133  1.9999999999999998e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  30.3 
 
 		 237 aa  133  1.9999999999999998e-30  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_2324  two component transcriptional regulator, winged helix family  36.09 
 
 		 223 aa  133  1.9999999999999998e-30  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.237639  n/a   
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  31.58 
 
 		 235 aa  134  1.9999999999999998e-30  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_009487  SaurJH9_0730  two component transcriptional regulator  31.74 
 
 		 228 aa  133  1.9999999999999998e-30  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  33.19 
 
 		 223 aa  134  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_0746  response regulator receiver  31.74 
 
 		 228 aa  133  1.9999999999999998e-30  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_1891  DNA-binding response regulator  34.48 
 
 		 223 aa  134  1.9999999999999998e-30  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  32.89 
 
 		 246 aa  133  1.9999999999999998e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal  1 
 
 
-
 
NC_008782  Ajs_2367  two component transcriptional regulator  30.47 
 
 		 235 aa  133  1.9999999999999998e-30  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008786  Veis_1288  two component transcriptional regulator  30.6 
 
 		 238 aa  133  1.9999999999999998e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  35.53 
 
 		 234 aa  133  3e-30  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  32.75 
 
 		 223 aa  133  3e-30  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_2142  two component transcriptional regulator  33.48 
 
 		 240 aa  132  3e-30  Chelativorans sp. BNC1  Bacteria  normal  0.46457  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  32.46 
 
 		 227 aa  132  3e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.0239565 
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  32.03 
 
 		 236 aa  132  3e-30  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_0274  two component transcriptional regulator, winged helix family  35.53 
 
 		 224 aa  133  3e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  30 
 
 		 228 aa  133  3e-30  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  33.19 
 
 		 223 aa  132  3.9999999999999996e-30  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  34.5 
 
 		 227 aa  132  3.9999999999999996e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  33.19 
 
 		 223 aa  132  3.9999999999999996e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  34.35 
 
 		 225 aa  132  3.9999999999999996e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  33.19 
 
 		 223 aa  132  3.9999999999999996e-30  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_0170  two component transcriptional regulator, winged helix family  33.48 
 
 		 232 aa  132  3.9999999999999996e-30  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_007516  Syncc9605_0109  two component transcriptional regulator  31.74 
 
 		 253 aa  132  3.9999999999999996e-30  Synechococcus sp. CC9605  Bacteria  normal  0.427788  normal  0.468211 
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  33.19 
 
 		 223 aa  132  3.9999999999999996e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  31.2 
 
 		 252 aa  132  3.9999999999999996e-30  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_005957  BT9727_1191  response regulator  33.19 
 
 		 223 aa  132  5e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  33.19 
 
 		 239 aa  132  5e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_013132  Cpin_2742  two component transcriptional regulator, winged helix family  30.34 
 
 		 230 aa  132  5e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.142828  normal  1 
 
 
-
 
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