More than 300 homologs were found in PanDaTox collection
for query gene GSU1879 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1879  DNA-binding response regulator  100 
 
 
238 aa  484  1e-136  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  86.81 
 
 
240 aa  430  1e-119  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  82.91 
 
 
243 aa  404  1.0000000000000001e-112  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  78.97 
 
 
234 aa  385  1e-106  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  78.97 
 
 
234 aa  383  1e-105  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  76.62 
 
 
236 aa  380  1e-104  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  74.36 
 
 
235 aa  373  1e-102  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0768  two component signal transduction response regulator  63.48 
 
 
236 aa  305  5.0000000000000004e-82  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000566504  n/a   
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  48.7 
 
 
234 aa  223  2e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal 
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  50.22 
 
 
236 aa  215  5.9999999999999996e-55  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal 
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  44.64 
 
 
240 aa  211  5.999999999999999e-54  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  44.54 
 
 
235 aa  203  2e-51  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  46.05 
 
 
241 aa  194  1e-48  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.154165 
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  44.12 
 
 
256 aa  186  3e-46  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2193  two component transcriptional regulator, winged helix family  43.72 
 
 
237 aa  180  1e-44  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0620475  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  45.74 
 
 
236 aa  180  2e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  46.19 
 
 
230 aa  177  9e-44  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  46.19 
 
 
230 aa  176  2e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  39.83 
 
 
232 aa  175  5e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_008009  Acid345_3061  two component transcriptional regulator  42.22 
 
 
229 aa  174  8e-43  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.296421  normal 
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  39.74 
 
 
230 aa  174  9.999999999999999e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  41.56 
 
 
230 aa  174  9.999999999999999e-43  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  43.86 
 
 
230 aa  173  1.9999999999999998e-42  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4168  two component transcriptional regulator  43.16 
 
 
237 aa  172  5e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.426048 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  40.62 
 
 
256 aa  169  2e-41  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0895  two component transcriptional regulator, winged helix family  36.84 
 
 
232 aa  169  4e-41  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  42.67 
 
 
236 aa  168  7e-41  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  33.93 
 
 
227 aa  166  2.9999999999999998e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  39.38 
 
 
230 aa  165  4e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  39.83 
 
 
234 aa  165  5e-40  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  39.83 
 
 
234 aa  165  5.9999999999999996e-40  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  39.56 
 
 
235 aa  165  5.9999999999999996e-40  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  38.22 
 
 
235 aa  164  1.0000000000000001e-39  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  39.06 
 
 
231 aa  164  1.0000000000000001e-39  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  40 
 
 
265 aa  163  2.0000000000000002e-39  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  37.78 
 
 
235 aa  163  2.0000000000000002e-39  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  37.78 
 
 
235 aa  163  2.0000000000000002e-39  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  36.61 
 
 
234 aa  164  2.0000000000000002e-39  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  41.52 
 
 
245 aa  163  2.0000000000000002e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  38.63 
 
 
231 aa  162  4.0000000000000004e-39  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  40.69 
 
 
233 aa  162  6e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  42.48 
 
 
229 aa  161  7e-39  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_008820  P9303_01831  two-component response regulator  41 
 
 
290 aa  161  7e-39  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007516  Syncc9605_0109  two component transcriptional regulator  39.67 
 
 
253 aa  160  1e-38  Synechococcus sp. CC9605  Bacteria  normal  0.427788  normal  0.468211 
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  38.94 
 
 
234 aa  160  2e-38  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  39.83 
 
 
236 aa  160  2e-38  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_007513  Syncc9902_0153  two component transcriptional regulator  39.26 
 
 
253 aa  160  2e-38  Synechococcus sp. CC9902  Bacteria  normal  0.711737  n/a   
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  39.58 
 
 
248 aa  160  2e-38  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  160  2e-38  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  39.91 
 
 
231 aa  160  2e-38  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008463  PA14_68700  osmolarity response regulator  40.69 
 
 
247 aa  160  2e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5944  osmolarity response regulator  40.69 
 
 
247 aa  160  2e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  160  2e-38  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  37.28 
 
 
232 aa  160  2e-38  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  39.58 
 
 
248 aa  160  2e-38  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  38.94 
 
 
234 aa  160  2e-38  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  159  3e-38  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  159  3e-38  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  37.18 
 
 
239 aa  159  3e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  159  3e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  37.18 
 
 
239 aa  159  3e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  40.09 
 
 
235 aa  159  3e-38  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  42.15 
 
 
230 aa  159  3e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  159  3e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_013440  Hoch_0552  two component transcriptional regulator, winged helix family  40.69 
 
 
226 aa  159  3e-38  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.496663 
 
 
-
 
NC_011830  Dhaf_0287  two component transcriptional regulator, winged helix family  37.99 
 
 
229 aa  159  3e-38  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00220806  n/a   
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  40.43 
 
 
257 aa  159  3e-38  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  37.18 
 
 
239 aa  159  3e-38  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  40.17 
 
 
237 aa  159  4e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  36.82 
 
 
239 aa  159  4e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0819  two component transcriptional regulator, winged helix family  37.34 
 
 
246 aa  159  4e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_18111  two-component response regulator  39.17 
 
 
248 aa  159  4e-38  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  39.17 
 
 
248 aa  159  4e-38  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  39.57 
 
 
246 aa  159  5e-38  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.470012 
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  38.63 
 
 
237 aa  159  5e-38  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal 
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  37.83 
 
 
238 aa  159  5e-38  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  39.57 
 
 
246 aa  159  5e-38  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  37.72 
 
 
239 aa  158  6e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0470  two component transcriptional regulator, winged helix family  39.83 
 
 
239 aa  158  6e-38  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0260801  normal 
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  36.63 
 
 
246 aa  158  8e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.0723779 
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  36.32 
 
 
239 aa  157  1e-37  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  39.57 
 
 
246 aa  157  1e-37  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  39.5 
 
 
236 aa  157  1e-37  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  37.13 
 
 
236 aa  157  1e-37  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  36.21 
 
 
238 aa  157  1e-37  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2866  two component transcriptional regulator, winged helix family  37.39 
 
 
231 aa  157  1e-37  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_3821  response regulator receiver  37.8 
 
 
264 aa  157  1e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.169085  n/a   
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  38.63 
 
 
236 aa  157  2e-37  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_009976  P9211_17451  two-component response regulator  39.58 
 
 
269 aa  157  2e-37  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  40 
 
 
247 aa  157  2e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_013093  Amir_3871  two component transcriptional regulator, winged helix family  41.26 
 
 
227 aa  157  2e-37  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000000473157  n/a   
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  38.96 
 
 
263 aa  156  2e-37  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  39.21 
 
 
239 aa  157  2e-37  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_011729  PCC7424_2845  two component transcriptional regulator, winged helix family  43.1 
 
 
234 aa  156  3e-37  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  36.75 
 
 
239 aa  156  3e-37  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  40.18 
 
 
245 aa  156  3e-37  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  38.77 
 
 
234 aa  156  3e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  36.75 
 
 
239 aa  156  3e-37  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  38.05 
 
 
229 aa  155  4e-37  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  37.34 
 
 
238 aa  155  4e-37  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
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