More than 300 homologs were found in PanDaTox collection
for query gene Phep_3446 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013061  Phep_3446  response regulator receiver  100 
 
 
234 aa  473  1e-133  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  62.61 
 
 
235 aa  290  2e-77  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  49.13 
 
 
240 aa  231  7.000000000000001e-60  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  49.13 
 
 
243 aa  224  1e-57  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  48.7 
 
 
238 aa  223  2e-57  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  48.03 
 
 
234 aa  221  6e-57  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  47.6 
 
 
234 aa  221  8e-57  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  48.7 
 
 
235 aa  216  2e-55  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  44.74 
 
 
241 aa  209  2e-53  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.154165 
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  44.59 
 
 
236 aa  207  1e-52  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  41.6 
 
 
256 aa  205  6e-52  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  45.13 
 
 
236 aa  198  6e-50  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal 
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  44.98 
 
 
240 aa  191  7e-48  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  42.36 
 
 
230 aa  182  3e-45  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0768  two component signal transduction response regulator  40.97 
 
 
236 aa  178  4.999999999999999e-44  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000566504  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  45.18 
 
 
231 aa  179  4.999999999999999e-44  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  44.74 
 
 
231 aa  177  1e-43  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  41.6 
 
 
236 aa  176  3e-43  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  41.59 
 
 
236 aa  175  4e-43  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  37.66 
 
 
230 aa  175  6e-43  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  41.23 
 
 
230 aa  174  9e-43  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  41.38 
 
 
230 aa  174  9.999999999999999e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_013132  Cpin_1242  two component transcriptional regulator, winged helix family  41.92 
 
 
234 aa  172  5.999999999999999e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  41.15 
 
 
256 aa  172  5.999999999999999e-42  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3061  two component transcriptional regulator  39.47 
 
 
229 aa  171  6.999999999999999e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.296421  normal 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  39.39 
 
 
237 aa  171  9e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  41.23 
 
 
230 aa  171  1e-41  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  37.61 
 
 
230 aa  170  2e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  42.22 
 
 
230 aa  169  3e-41  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  42.42 
 
 
234 aa  169  3e-41  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  42.42 
 
 
234 aa  169  3e-41  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  42.73 
 
 
229 aa  169  4e-41  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  37.61 
 
 
406 aa  169  5e-41  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  41.77 
 
 
236 aa  167  1e-40  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  37.66 
 
 
230 aa  167  1e-40  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4970  two component transcriptional regulator  40.6 
 
 
228 aa  167  1e-40  Flavobacterium johnsoniae UW101  Bacteria  normal  0.375881  n/a   
 
 
-
 
NC_010718  Nther_1220  two component transcriptional regulator, winged helix family  40.97 
 
 
233 aa  167  1e-40  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00991602 
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  37.66 
 
 
230 aa  167  1e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  36.84 
 
 
227 aa  166  2.9999999999999998e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_3566  two component transcriptional regulator, winged helix family  40.79 
 
 
228 aa  165  5e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.720677 
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.73 
 
 
240 aa  165  5e-40  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  38.96 
 
 
232 aa  164  6.9999999999999995e-40  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  42.29 
 
 
236 aa  164  1.0000000000000001e-39  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_007335  PMN2A_1196  two component transcriptional regulator  40.69 
 
 
246 aa  163  2.0000000000000002e-39  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  40.61 
 
 
238 aa  163  2.0000000000000002e-39  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  34.8 
 
 
235 aa  163  2.0000000000000002e-39  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  40.43 
 
 
239 aa  163  2.0000000000000002e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  34.8 
 
 
235 aa  163  2.0000000000000002e-39  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  38.7 
 
 
232 aa  163  2.0000000000000002e-39  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_011729  PCC7424_3600  two component transcriptional regulator, winged helix family  37.82 
 
 
250 aa  163  2.0000000000000002e-39  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00284005 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  39.65 
 
 
231 aa  162  3e-39  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  34.36 
 
 
235 aa  162  3e-39  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  4.0000000000000004e-39  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  4.0000000000000004e-39  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  40.71 
 
 
245 aa  162  4.0000000000000004e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  39.11 
 
 
234 aa  162  4.0000000000000004e-39  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  39.57 
 
 
248 aa  162  4.0000000000000004e-39  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_20711  two-component response regulator  40.09 
 
 
246 aa  162  4.0000000000000004e-39  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3460  two component transcriptional regulator, winged helix family  38.72 
 
 
250 aa  162  5.0000000000000005e-39  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  40.17 
 
 
230 aa  162  6e-39  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  6e-39  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  40 
 
 
239 aa  162  6e-39  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  40 
 
 
239 aa  162  6e-39  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  6e-39  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  6e-39  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  38.03 
 
 
239 aa  162  6e-39  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  40 
 
 
239 aa  162  6e-39  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  40 
 
 
239 aa  161  7e-39  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3703  two component transcriptional regulator  38.63 
 
 
232 aa  161  7e-39  Saccharophagus degradans 2-40  Bacteria  normal  0.230236  normal  0.0884672 
 
 
-
 
NC_013161  Cyan8802_2657  two component transcriptional regulator, winged helix family  38.72 
 
 
250 aa  161  7e-39  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.350713 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  37.17 
 
 
257 aa  161  1e-38  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0258  two component transcriptional regulator, winged helix family  41.41 
 
 
236 aa  161  1e-38  Eggerthella lenta DSM 2243  Bacteria  normal  0.606292  normal 
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  39.21 
 
 
231 aa  161  1e-38  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  36.4 
 
 
229 aa  161  1e-38  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal 
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  40 
 
 
238 aa  160  1e-38  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  36.96 
 
 
230 aa  160  2e-38  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_013132  Cpin_0346  two component transcriptional regulator, winged helix family  41.38 
 
 
234 aa  160  2e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  39.48 
 
 
233 aa  160  2e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  38.03 
 
 
248 aa  160  2e-38  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
NC_013132  Cpin_7053  two component transcriptional regulator, winged helix family  37.77 
 
 
248 aa  159  3e-38  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00262574  normal 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  38.39 
 
 
236 aa  159  3e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  37.61 
 
 
252 aa  159  3e-38  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  35.78 
 
 
239 aa  159  3e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_18111  two-component response regulator  38.72 
 
 
248 aa  159  3e-38  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  40.09 
 
 
223 aa  159  4e-38  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_005945  BAS2056  DNA-binding response regulator  39.01 
 
 
227 aa  159  4e-38  Bacillus anthracis str. Sterne  Bacteria  normal  0.413172  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  40.09 
 
 
223 aa  159  4e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  40.09 
 
 
223 aa  159  4e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2212  DNA-binding response regulator  39.01 
 
 
227 aa  159  4e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2240  DNA-binding response regulator  39.01 
 
 
227 aa  159  4e-38  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.85177e-28 
 
 
-
 
NC_011725  BCB4264_A2194  DNA-binding response regulator  39.01 
 
 
227 aa  159  4e-38  Bacillus cereus B4264  Bacteria  hitchhiker  0.00702475  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  40.09 
 
 
223 aa  159  4e-38  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  39.13 
 
 
235 aa  159  5e-38  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  39.65 
 
 
223 aa  158  6e-38  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1191  response regulator  39.65 
 
 
223 aa  158  6e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  35.74 
 
 
231 aa  158  6e-38  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  37.61 
 
 
248 aa  158  6e-38  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5387  two component transcriptional regulator, winged helix family  36.48 
 
 
236 aa  158  7e-38  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  39.65 
 
 
223 aa  158  7e-38  Bacillus cereus G9842  Bacteria  normal  normal  0.910988 
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  39.82 
 
 
245 aa  158  7e-38  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
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